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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: BLYP/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at BLYP/TZVP
 hartrees
Energy at 0K-399.010166
Energy at 298.15K-399.019884
HF Energy-399.010166
Nuclear repulsion energy321.645845
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3625 3616 35.66      
2 A 3576 3567 42.63      
3 A 3471 3462 2.40      
4 A 3385 3376 1.19      
5 A 3039 3031 18.07      
6 A 2989 2981 12.87      
7 A 2922 2915 45.91      
8 A 1701 1697 252.86      
9 A 1621 1617 30.79      
10 A 1460 1457 3.99      
11 A 1384 1381 31.94      
12 A 1361 1357 3.62      
13 A 1348 1345 8.08      
14 A 1327 1323 17.59      
15 A 1266 1263 7.12      
16 A 1210 1207 18.31      
17 A 1146 1143 6.87      
18 A 1088 1085 149.88      
19 A 1056 1053 138.67      
20 A 1005 1002 81.56      
21 A 982 979 35.23      
22 A 955 952 6.58      
23 A 813 811 151.40      
24 A 779 777 35.51      
25 A 707 706 19.27      
26 A 605 604 82.36      
27 A 571 570 20.52      
28 A 503 501 190.45      
29 A 483 482 10.63      
30 A 438 437 9.37      
31 A 281 281 33.10      
32 A 278 277 7.79      
33 A 264 263 2.46      
34 A 197 196 1.20      
35 A 139 138 4.91      
36 A 39 39 1.58      

Unscaled Zero Point Vibrational Energy (zpe) 24005.8 cm-1
Scaled (by 0.9975) Zero Point Vibrational Energy (zpe) 23945.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/TZVP
ABC
0.11326 0.07524 0.05204

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/TZVP

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.814 -0.539 0.011
O2 2.096 -0.322 -0.389
O3 0.465 -1.562 0.575
C4 -0.098 0.671 -0.304
C5 -1.542 0.419 0.191
O6 -2.156 -0.724 -0.396
N7 0.403 1.949 0.231
H8 2.627 -1.110 -0.160
H9 -0.137 0.756 -1.401
H10 -1.539 0.360 1.294
H11 -2.143 1.290 -0.090
H12 -1.718 -1.514 -0.036
H13 1.298 2.213 -0.178
H14 0.517 1.917 1.245

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.36081.21931.54742.54923.00332.53141.90942.13872.82613.47792.71372.80062.7645
O21.36082.26442.41003.75804.27122.90050.97762.67844.06334.54504.01182.66673.1906
O31.21932.26442.46512.84572.91793.52872.32843.10482.86783.92152.26753.93863.5436
C41.54742.41002.46511.54752.48811.47363.25921.10022.17442.14712.73372.08382.0814
C52.54923.75802.84571.54751.42352.47554.45492.14951.10511.09541.95413.37962.7566
O63.00334.27122.91792.48811.42353.75344.80492.69762.10072.03740.97254.53924.1006
N72.53142.90053.52871.47362.47553.75343.80312.09242.72492.64904.07031.01881.0207
H81.90940.97762.32843.25924.45494.80493.80313.55894.65115.34064.36623.57973.9490
H92.13872.67843.10481.10022.14952.69762.09243.55893.06322.45433.08492.38262.9623
H102.82614.06332.86782.17441.10512.10072.72494.65113.06321.77442.30553.69412.5795
H113.47794.54503.92152.14711.09542.03742.64905.34062.45431.77442.83723.56313.0416
H122.71374.01182.26752.73371.95410.97254.07034.36623.08492.30552.83724.79694.2912
H132.80062.66673.93862.08383.37964.53921.01883.57972.38263.69413.56314.79691.6496
H142.76453.19063.54362.08142.75664.10061.02073.94902.96232.57953.04164.29121.6496

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.368 C1 C4 C5 110.912
C1 C4 N7 113.819 C1 C4 H9 106.538
O2 C1 O3 122.624 O2 C1 C4 111.771
O3 C1 C4 125.585 C4 C5 O6 113.681
C4 C5 H10 108.974 C4 C5 H11 107.427
C4 N7 H13 112.161 C4 N7 H14 111.831
C5 C4 N7 110.025 C5 C4 H9 107.351
C5 O6 H12 107.799 O6 C5 H10 111.737
O6 C5 H11 107.253 N7 C4 H9 107.890
H10 C5 H11 107.485 H13 N7 H14 107.973
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.119      
2 O -0.255      
3 O -0.299      
4 C -0.057      
5 C -0.117      
6 O -0.359      
7 N -0.387      
8 H 0.278      
9 H 0.157      
10 H 0.101      
11 H 0.141      
12 H 0.274      
13 H 0.212      
14 H 0.193      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.832 0.703 0.626 2.985
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.932 -1.503 -1.576
y -1.503 -44.119 1.800
z -1.576 1.800 -42.502
Traceless
 xyz
x 1.379 -1.503 -1.576
y -1.503 -1.902 1.800
z -1.576 1.800 0.523
Polar
3z2-r21.047
x2-y22.187
xy-1.503
xz-1.576
yz1.800


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 9.234 -0.095 -0.377
y -0.095 9.219 -0.263
z -0.377 -0.263 7.144


<r2> (average value of r2) Å2
<r2> 220.054
(<r2>)1/2 14.834