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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: QCISD/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at QCISD/TZVP
 hartrees
Energy at 0K-398.115080
Energy at 298.15K-398.125151
HF Energy-396.867608
Nuclear repulsion energy325.745926
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at QCISD/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3860 3687 48.65      
2 A 3810 3640 73.52      
3 A 3622 3460 3.97      
4 A 3528 3370 1.92      
5 A 3160 3018 18.42      
6 A 3103 2964 12.60      
7 A 3044 2908 41.85      
8 A 1821 1740 252.80      
9 A 1677 1602 34.46      
10 A 1532 1463 4.22      
11 A 1470 1404 29.16      
12 A 1443 1378 10.25      
13 A 1422 1359 43.35      
14 A 1411 1348 12.67      
15 A 1348 1287 6.80      
16 A 1269 1212 19.66      
17 A 1217 1163 15.31      
18 A 1189 1136 220.29      
19 A 1158 1106 31.78      
20 A 1112 1063 89.17      
21 A 1054 1007 37.02      
22 A 1019 973 1.62      
23 A 913 872 170.80      
24 A 829 792 16.54      
25 A 754 720 20.25      
26 A 620 592 67.59      
27 A 587 561 51.05      
28 A 530 506 136.19      
29 A 506 484 78.69      
30 A 456 436 7.86      
31 A 303 289 6.02      
32 A 293 280 15.80      
33 A 264 253 26.62      
34 A 215 205 1.60      
35 A 163 156 4.52      
36 A 41 39 1.18      

Unscaled Zero Point Vibrational Energy (zpe) 25369.7 cm-1
Scaled (by 0.9553) Zero Point Vibrational Energy (zpe) 24235.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at QCISD/TZVP
ABC
0.11848 0.07750 0.05230

See section I.F.4 to change rotational constant units
Geometric Data calculated at QCISD/TZVP

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.791 -0.538 0.006
O2 2.063 -0.332 -0.385
O3 0.429 -1.543 0.572
C4 -0.093 0.667 -0.311
C5 -1.514 0.427 0.197
O6 -2.126 -0.697 -0.396
N7 0.421 1.919 0.232
H8 2.565 -1.123 -0.149
H9 -0.136 0.752 -1.400
H10 -1.494 0.351 1.292
H11 -2.108 1.300 -0.068
H12 -1.675 -1.472 -0.050
H13 1.320 2.149 -0.171
H14 0.542 1.853 1.236

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34671.20901.52732.50602.94832.49481.87472.12182.76893.43382.63702.74482.7008
O21.34672.24812.37703.70254.20452.85310.96622.65403.99154.49043.92212.59873.1169
O31.20902.24812.43602.79212.85983.47852.29393.07872.79333.86422.19453.87053.4624
C41.52732.37702.43601.52782.44921.45853.20841.09402.15252.12662.67292.05282.0505
C52.50603.70252.79211.52781.41032.44384.37742.13421.09841.08921.92183.33652.7096
O62.94834.20452.85982.44921.41033.70464.71672.65812.08502.02410.96154.47474.0355
N72.49482.85313.47851.45852.44383.70463.74062.08272.69312.62153.99641.01161.0136
H81.87470.96622.29393.20844.37744.71673.74063.51854.55295.26504.25553.50123.8560
H92.12182.65403.07871.09402.13422.65812.08273.51853.04242.44213.02292.36292.9370
H102.76893.99152.79332.15251.09842.08502.69314.55293.04241.76942.27073.64662.5313
H113.43384.49043.86422.12661.08922.02412.62155.26502.44211.76942.80633.53323.0054
H122.63703.92212.19452.67291.92180.96153.99644.25553.02292.27072.80634.70074.1983
H132.74482.59873.87052.05283.33654.47471.01163.50122.36293.64663.53324.70071.6355
H142.70083.11693.46242.05052.70964.03551.01363.85602.93702.53133.00544.19831.6355

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.149 C1 C4 C5 110.220
C1 C4 N7 113.332 C1 C4 H9 106.923
O2 C1 O3 123.108 O2 C1 C4 111.442
O3 C1 C4 125.411 C4 C5 O6 112.872
C4 C5 H10 109.000 C4 C5 H11 107.514
C4 N7 H13 111.124 C4 N7 H14 110.805
C5 C4 N7 109.814 C5 C4 H9 107.832
C5 O6 H12 106.713 O6 C5 H10 111.823
O6 C5 H11 107.456 N7 C4 H9 108.523
H10 C5 H11 107.961 H13 N7 H14 107.719
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability