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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B2PLYP/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B2PLYP/TZVP
 hartrees
Energy at 0K-398.758613
Energy at 298.15K-398.768619
HF Energy-398.358497
Nuclear repulsion energy325.558503
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B2PLYP/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3803 3630 55.60      
2 A 3754 3583 77.74      
3 A 3614 3449 6.10      
4 A 3521 3360 2.63      
5 A 3152 3008 16.85      
6 A 3092 2951 11.97      
7 A 3032 2894 43.64      
8 A 1781 1700 255.84      
9 A 1673 1596 35.75      
10 A 1519 1450 4.57      
11 A 1445 1379 26.50      
12 A 1419 1354 5.49      
13 A 1401 1337 22.24      
14 A 1391 1328 30.06      
15 A 1325 1264 12.26      
16 A 1256 1199 16.64      
17 A 1198 1143 7.91      
18 A 1162 1109 209.35      
19 A 1134 1082 60.17      
20 A 1086 1036 97.29      
21 A 1037 989 40.80      
22 A 1005 959 1.11      
23 A 871 831 168.21      
24 A 818 781 33.62      
25 A 745 711 20.59      
26 A 623 595 87.42      
27 A 589 562 27.78      
28 A 529 505 190.54      
29 A 508 485 26.58      
30 A 454 433 8.47      
31 A 296 283 5.36      
32 A 288 275 19.51      
33 A 270 257 22.71      
34 A 211 201 1.96      
35 A 158 151 4.89      
36 A 38 37 1.31      

Unscaled Zero Point Vibrational Energy (zpe) 25097.2 cm-1
Scaled (by 0.9544) Zero Point Vibrational Energy (zpe) 23952.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B2PLYP/TZVP
ABC
0.11762 0.07759 0.05245

See section I.F.4 to change rotational constant units
Geometric Data calculated at B2PLYP/TZVP

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.791 -0.537 0.008
O2 2.065 -0.336 -0.382
O3 0.426 -1.545 0.570
C4 -0.092 0.670 -0.309
C5 -1.516 0.429 0.191
O6 -2.120 -0.705 -0.393
N7 0.419 1.925 0.231
H8 2.573 -1.127 -0.148
H9 -0.131 0.754 -1.397
H10 -1.504 0.364 1.285
H11 -2.111 1.296 -0.085
H12 -1.673 -1.481 -0.040
H13 1.314 2.167 -0.173
H14 0.532 1.877 1.236

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34761.21021.52822.50752.94282.50001.88382.11942.77683.43382.63832.76022.7205
O21.34762.24772.38093.70644.20102.86290.96812.65374.00124.49373.92382.62163.1407
O31.21022.24772.43862.79552.84923.48682.30193.07722.80813.86572.18673.88843.4876
C41.52822.38092.43861.52852.45151.45873.21761.09252.15182.12622.68282.05842.0570
C52.50753.70642.79551.52851.41072.44684.38812.13221.09681.08751.93003.34142.7173
O62.94284.20102.84922.45151.41073.70854.71812.66352.08292.02450.96314.48214.0434
N72.50002.86293.48681.45872.44683.70853.75432.07902.69272.62684.00641.01101.0128
H81.88380.96812.30193.21764.38814.71813.75433.52254.57205.27414.26173.52593.8862
H92.11942.65373.07721.09252.13222.66352.07903.52253.03902.43653.03612.36272.9379
H102.77684.00122.80812.15181.09682.08292.69274.57203.03901.76532.27783.64992.5371
H113.43384.49373.86572.12621.08752.02452.62685.27412.43651.76532.81203.53573.0116
H122.63833.92382.18672.68281.93000.96314.00644.26173.03612.27782.81204.71674.2144
H132.76022.62163.88842.05843.34144.48211.01103.52592.36273.64993.53574.71671.6373
H142.72053.14073.48762.05702.71734.04341.01283.88622.93792.53713.01164.21441.6373

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.749 C1 C4 C5 110.236
C1 C4 N7 113.622 C1 C4 H9 106.763
O2 C1 O3 122.887 O2 C1 C4 111.611
O3 C1 C4 125.473 C4 C5 O6 112.975
C4 C5 H10 108.985 C4 C5 H11 107.540
C4 N7 H13 111.628 C4 N7 H14 111.391
C5 C4 N7 109.965 C5 C4 H9 107.722
C5 O6 H12 107.284 O6 C5 H10 111.724
O6 C5 H11 107.558 N7 C4 H9 108.301
H10 C5 H11 107.839 H13 N7 H14 108.002
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B2PLYP/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.144      
2 O -0.276      
3 O -0.325      
4 C -0.028      
5 C -0.098      
6 O -0.376      
7 N -0.404      
8 H 0.291      
9 H 0.153      
10 H 0.095      
11 H 0.137      
12 H 0.281      
13 H 0.215      
14 H 0.193      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.040 0.526 0.700 3.164
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -42.101 -1.895 -1.511
y -1.895 -44.522 1.819
z -1.511 1.819 -41.616
Traceless
 xyz
x 0.968 -1.895 -1.511
y -1.895 -2.664 1.819
z -1.511 1.819 1.695
Polar
3z2-r23.391
x2-y22.421
xy-1.895
xz-1.511
yz1.819


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.475 0.089 -0.301
y 0.089 8.460 -0.272
z -0.301 -0.272 6.641


<r2> (average value of r2) Å2
<r2> 215.814
(<r2>)1/2 14.691