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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/TZVP
 hartrees
Energy at 0K-398.707869
Energy at 298.15K-398.717894
HF Energy-398.707869
Nuclear repulsion energy326.944896
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3803 3651 65.55      
2 A 3785 3634 90.55      
3 A 3632 3487 7.70      
4 A 3540 3398 3.07      
5 A 3133 3008 16.30      
6 A 3067 2944 12.80      
7 A 3004 2884 49.02      
8 A 1820 1748 287.37      
9 A 1668 1602 40.24      
10 A 1500 1440 5.72      
11 A 1439 1382 30.99      
12 A 1409 1353 10.48      
13 A 1395 1339 54.69      
14 A 1385 1330 17.68      
15 A 1323 1270 9.63      
16 A 1250 1200 16.99      
17 A 1203 1155 12.89      
18 A 1175 1128 206.74      
19 A 1146 1100 30.62      
20 A 1113 1068 117.51      
21 A 1037 996 34.77      
22 A 1003 963 0.94      
23 A 857 823 138.20      
24 A 818 786 74.37      
25 A 752 722 23.25      
26 A 630 605 98.31      
27 A 589 566 14.63      
28 A 550 528 210.29      
29 A 518 497 8.66      
30 A 450 432 9.63      
31 A 299 287 5.51      
32 A 288 276 12.43      
33 A 265 254 28.64      
34 A 213 204 4.72      
35 A 160 153 4.54      
36 A 33 32 1.15      

Unscaled Zero Point Vibrational Energy (zpe) 25124.0 cm-1
Scaled (by 0.9601) Zero Point Vibrational Energy (zpe) 24121.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/TZVP
ABC
0.11939 0.07881 0.05225

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/TZVP

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.783 -0.535 0.007
O2 2.055 -0.343 -0.372
O3 0.413 -1.539 0.561
C4 -0.090 0.672 -0.309
C5 -1.511 0.431 0.186
O6 -2.101 -0.706 -0.387
N7 0.422 1.920 0.228
H8 2.556 -1.135 -0.136
H9 -0.127 0.755 -1.401
H10 -1.501 0.373 1.284
H11 -2.109 1.297 -0.096
H12 -1.645 -1.473 -0.028
H13 1.318 2.159 -0.175
H14 0.531 1.873 1.233

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34071.20521.52302.49532.91642.49121.87692.11522.76973.42532.60332.75262.7138
O21.34072.23542.37403.69114.17212.85470.96632.65063.98714.48413.88362.61633.1323
O31.20522.23542.42882.77852.81293.47522.28943.06632.80023.85162.14113.87793.4797
C41.52302.37402.42881.52382.43911.45203.20891.09502.14882.12442.66412.05242.0513
C52.49533.69112.77851.52381.40332.44024.36952.13041.09911.09011.92073.33442.7098
O62.91644.17212.81292.43911.40333.69314.68352.65722.07772.02370.96224.46594.0252
N72.49122.85473.47521.45202.44023.69313.74462.07602.68392.62683.98131.01091.0125
H81.87690.96632.28943.20894.36954.68353.74463.51704.55495.26124.21533.51983.8764
H92.11522.65063.06631.09502.13042.65722.07603.51703.03972.43423.02532.35832.9359
H102.76973.98712.80022.14881.09912.07772.68394.55493.03971.76852.27003.64142.5254
H113.42534.48413.85162.12441.09012.02372.62685.26122.43421.76852.80963.53493.0114
H122.60333.88362.14112.66411.92070.96223.98134.21533.02532.27002.80964.68964.1858
H132.75262.61633.87792.05243.33444.46591.01093.51982.35833.64143.53494.68961.6382
H142.71383.13233.47972.05132.70984.02521.01253.87642.93592.52543.01144.18581.6382

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.787 C1 C4 C5 109.972
C1 C4 N7 113.705 C1 C4 H9 106.652
O2 C1 O3 122.724 O2 C1 C4 111.838
O3 C1 C4 125.413 C4 C5 O6 112.812
C4 C5 H10 108.943 C4 C5 H11 107.573
C4 N7 H13 111.629 C4 N7 H14 111.426
C5 C4 N7 110.145 C5 C4 H9 107.756
C5 O6 H12 107.102 O6 C5 H10 111.682
O6 C5 H11 107.852 N7 C4 H9 108.375
H10 C5 H11 107.769 H13 N7 H14 108.123
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.160      
2 O -0.268      
3 O -0.337      
4 C -0.082      
5 C -0.131      
6 O -0.360      
7 N -0.410      
8 H 0.296      
9 H 0.168      
10 H 0.106      
11 H 0.148      
12 H 0.285      
13 H 0.224      
14 H 0.202      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.225 0.576 0.679 3.346
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.676 -2.122 -1.380
y -2.122 -44.256 1.822
z -1.380 1.822 -40.712
Traceless
 xyz
x 0.808 -2.122 -1.380
y -2.122 -3.063 1.822
z -1.380 1.822 2.254
Polar
3z2-r24.508
x2-y22.581
xy-2.122
xz-1.380
yz1.822


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.508 0.097 -0.245
y 0.097 8.459 -0.215
z -0.245 -0.215 6.547


<r2> (average value of r2) Å2
<r2> 214.287
(<r2>)1/2 14.639