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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HF/Def2TZVPP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HF/Def2TZVPP
 hartrees
Energy at 0K-409.623933
Energy at 298.15K-409.632268
HF Energy-409.623933
Nuclear repulsion energy417.781123
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/Def2TZVPP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3900 3535 123.23      
2 A' 3390 3073 2.02      
3 A' 3347 3033 18.50      
4 A' 3336 3024 16.24      
5 A' 1816 1646 122.54      
6 A' 1784 1617 169.33      
7 A' 1703 1543 40.21      
8 A' 1618 1466 10.89      
9 A' 1548 1403 50.08      
10 A' 1548 1403 85.43      
11 A' 1486 1347 69.71      
12 A' 1420 1287 34.20      
13 A' 1399 1268 7.39      
14 A' 1305 1183 4.97      
15 A' 1252 1135 44.16      
16 A' 1220 1106 15.03      
17 A' 1155 1047 29.85      
18 A' 1018 922 1.39      
19 A' 983 891 19.20      
20 A' 867 786 22.69      
21 A' 711 645 0.07      
22 A' 614 556 2.95      
23 A' 481 436 12.75      
24 A" 1138 1032 0.27      
25 A" 1079 978 5.79      
26 A" 1037 940 4.05      
27 A" 905 820 14.85      
28 A" 722 654 15.78      
29 A" 672 609 17.15      
30 A" 547 496 99.71      
31 A" 464 421 17.25      
32 A" 276 251 0.20      
33 A" 253 230 7.44      

Unscaled Zero Point Vibrational Energy (zpe) 22496.4 cm-1
Scaled (by 0.9064) Zero Point Vibrational Energy (zpe) 20390.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/Def2TZVPP
ABC
0.14256 0.05972 0.04209

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/Def2TZVPP

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.812 -1.220 0.000
C2 -2.087 0.075 0.000
N3 -1.249 1.084 0.000
C4 0.000 0.685 0.000
C5 0.440 -0.622 0.000
C6 -0.548 -1.579 0.000
N7 1.816 -0.675 0.000
C8 2.172 0.551 0.000
N9 1.133 1.431 0.000
H10 -3.128 0.327 0.000
H11 -0.329 -2.629 0.000
H12 3.186 0.887 0.000
H13 1.186 2.418 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.32412.37102.62902.32931.31403.66874.35973.96202.03072.04565.42344.7137
C21.32411.31092.17422.62132.25983.97484.28573.49361.07073.22565.33494.0247
N32.37101.31091.31102.40062.75363.53413.46262.40732.02533.82514.43942.7765
C42.62902.17421.31101.37982.33002.26942.17651.35643.14813.33093.19232.0997
C52.32932.62132.40061.37981.37511.37762.09242.16733.69162.14913.13353.1310
C61.31402.25982.75362.33001.37512.53123.45503.44783.20761.07254.47464.3573
N73.66873.97483.53412.26941.37762.53121.27652.21425.04452.90212.07723.1572
C84.35974.28573.46262.17652.09243.45501.27651.36205.30474.04601.06782.1123
N93.96203.49362.40731.35642.16733.44782.21421.36204.40144.31552.12390.9888
H102.03071.07072.02533.14813.69163.20765.04455.30474.40144.07066.33844.7935
H112.04563.22563.82513.33092.14911.07252.90214.04604.31554.07064.97175.2700
H125.42345.33494.43943.19233.13354.47462.07721.06782.12396.33844.97172.5195
H134.71374.02472.77652.09973.13104.35733.15722.11230.98884.79355.27002.5195

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.275 N1 C2 H10 115.578
N1 C6 C5 120.028 N1 C6 H11 117.645
C2 N1 C6 117.878 C2 N3 C4 112.045
N3 C2 H10 116.147 N3 C4 C5 126.271
N3 C4 N9 128.968 C4 C5 C6 115.504
C4 C5 N7 110.777 C4 N9 C8 106.391
C4 N9 H13 126.390 C5 C4 N9 104.761
C5 C6 H11 122.327 C5 N7 C8 104.003
C6 C5 N7 133.719 N7 C8 N9 114.069
N7 C8 H12 124.524 C8 N9 H13 127.219
N9 C8 H12 121.407
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/Def2TZVPP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.412      
2 C 0.293      
3 N -0.440      
4 C 0.342      
5 C 0.046      
6 C 0.109      
7 N -0.390      
8 C 0.246      
9 N -0.286      
10 H 0.082      
11 H 0.095      
12 H 0.108      
13 H 0.207      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.248 2.882 0.000 3.655
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.490 6.412 0.000
y 6.412 -47.714 0.000
z 0.000 0.000 -52.378
Traceless
 xyz
x -0.444 6.412 0.000
y 6.412 3.719 0.000
z 0.000 0.000 -3.276
Polar
3z2-r2-6.552
x2-y2-2.775
xy6.412
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.433 1.349 0.000
y 1.349 11.885 0.000
z 0.000 0.000 6.242


<r2> (average value of r2) Å2
<r2> 249.132
(<r2>)1/2 15.784