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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: HSEh1PBE/6-31+G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at HSEh1PBE/6-31+G**
 hartrees
Energy at 0K-595.601160
Energy at 298.15K-595.614030
HF Energy-595.601160
Nuclear repulsion energy287.403079
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/6-31+G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3139 2997 35.71      
2 A' 3078 2939 36.43      
3 A' 3053 2915 53.48      
4 A' 3052 2915 26.32      
5 A' 3045 2908 17.58      
6 A' 3031 2894 9.81      
7 A' 2736 2612 13.34      
8 A' 1511 1443 10.76      
9 A' 1503 1435 0.62      
10 A' 1492 1425 2.88      
11 A' 1490 1423 0.55      
12 A' 1486 1418 0.46      
13 A' 1420 1356 6.29      
14 A' 1415 1351 0.31      
15 A' 1380 1317 10.64      
16 A' 1312 1252 13.33      
17 A' 1249 1193 14.03      
18 A' 1149 1097 4.39      
19 A' 1093 1043 0.20      
20 A' 1081 1032 1.07      
21 A' 1047 1000 0.48      
22 A' 920 878 0.71      
23 A' 876 836 2.32      
24 A' 760 726 3.14      
25 A' 441 422 1.46      
26 A' 351 335 0.36      
27 A' 250 238 1.29      
28 A' 117 112 1.23      
29 A" 3139 2997 24.90      
30 A" 3131 2989 49.14      
31 A" 3102 2962 34.25      
32 A" 3087 2947 6.37      
33 A" 3065 2926 1.67      
34 A" 1503 1435 9.94      
35 A" 1334 1273 0.10      
36 A" 1333 1273 1.04      
37 A" 1287 1229 0.28      
38 A" 1222 1166 0.29      
39 A" 1088 1038 2.43      
40 A" 968 924 0.04      
41 A" 846 808 1.76      
42 A" 763 729 0.14      
43 A" 737 704 4.26      
44 A" 252 241 0.01      
45 A" 188 179 17.75      
46 A" 148 142 1.87      
47 A" 100 96 2.20      
48 A" 66 63 1.98      

Unscaled Zero Point Vibrational Energy (zpe) 35417.1 cm-1
Scaled (by 0.9548) Zero Point Vibrational Energy (zpe) 33816.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/6-31+G**
ABC
0.47868 0.02674 0.02593

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/6-31+G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.580 1.291 0.000
H2 -3.607 0.847 0.000
C3 -1.468 -0.002 0.000
H4 -1.658 -0.613 0.907
H5 -1.658 -0.613 -0.907
C6 0.000 0.424 0.000
H7 0.194 1.038 -0.866
H8 0.194 1.038 0.866
C9 0.908 -0.803 0.000
H10 0.714 -1.411 0.887
H11 0.714 -1.411 -0.887
C12 2.379 -0.379 0.000
H13 2.586 0.211 0.892
H14 2.586 0.211 -0.892
C15 3.292 -1.606 0.000
H16 3.102 -2.222 0.865
H17 3.102 -2.222 -0.865
H18 4.339 -1.298 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.11871.70502.30162.30162.72122.91642.91644.06794.35114.35115.23265.35245.35246.54736.73506.73507.3867
H21.11872.30082.59842.59843.63123.90253.90254.80674.95494.95496.11026.28906.28907.32167.42717.42718.2296
C31.70502.30081.11031.11031.52892.14372.14372.50762.74452.74453.86604.15704.15705.02315.15335.15335.9497
H42.30162.59841.11031.81482.15613.05002.48202.72842.50273.07924.14484.32374.68335.12955.02425.32766.1036
H52.30162.59841.11031.81482.15612.48203.05002.72843.07922.50274.14484.68334.32375.12955.32765.02426.1036
C62.72123.63121.52892.15612.15611.07921.07921.52682.15952.15952.51142.74422.74423.86784.16754.16754.6680
H72.91643.90252.14373.05002.48201.07921.73152.15683.05632.50422.74523.08212.53154.16444.69894.36844.8361
H82.91643.90252.14372.48203.05001.07921.73152.15682.50423.05632.74522.53153.08214.16444.36844.69894.8361
C94.06794.80672.50762.72842.72841.52682.15682.15681.09221.09221.53132.15462.15462.51552.75172.75173.4662
H104.35114.95492.74452.50273.07922.15953.05632.50421.09221.77322.15032.47723.04982.73312.52153.07023.7333
H114.35114.95492.74453.07922.50272.15952.50423.05631.09221.77322.15033.04982.47722.73313.07022.52153.7333
C125.23266.11023.86604.14484.14482.51142.74522.74521.53132.15032.15031.08991.08991.52922.15972.15972.1640
H135.35246.28904.15704.32374.68332.74423.08212.53152.15462.47723.04981.08991.78482.14432.48703.04532.4788
H145.35246.28904.15704.68334.32372.74422.53153.08212.15463.04982.47721.08991.78482.14433.04532.48702.4788
C156.54737.32165.02315.12955.12953.86784.16444.16442.51552.73312.73311.52922.14432.14431.07861.07861.0914
H166.73507.42715.15335.02425.32764.16754.69894.36842.75172.52153.07022.15972.48703.04531.07861.73051.7700
H176.73507.42715.15335.32765.02424.16754.36844.69892.75173.07022.52152.15973.04532.48701.07861.73051.7700
H187.38678.22965.94976.10366.10364.66804.83614.83613.46623.73333.73332.16402.47882.47881.09141.77001.7700

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 107.808 S1 C3 H5 107.808
S1 C3 C6 114.485 H2 S1 C3 107.311
C3 C6 H7 109.351 C3 C6 H8 109.351
C3 C6 C9 110.293 H4 C3 H5 109.626
H4 C3 C6 108.525 H5 C3 C6 108.525
C6 C9 H10 109.978 C6 C9 H11 109.978
C6 C9 C12 110.413 H7 C6 H8 106.691
H7 C6 C9 110.539 H8 C6 C9 110.539
C9 C12 H13 109.418 C9 C12 H14 109.418
C9 C12 C15 110.560 H10 C9 H11 108.538
H10 C9 C12 108.948 H11 C9 C12 108.948
C12 C15 H16 110.635 C12 C15 H17 110.635
C12 C15 H18 110.213 H13 C12 H14 109.928
H13 C12 C15 108.751 H14 C12 C15 108.751
H16 C15 H17 106.675 H16 C15 H18 109.303
H17 C15 H18 109.303
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/6-31+G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.124      
2 H 0.070      
3 C -0.525      
4 H 0.198      
5 H 0.198      
6 C -0.195      
7 H 0.178      
8 H 0.178      
9 C -0.302      
10 H 0.159      
11 H 0.159      
12 C -0.152      
13 H 0.162      
14 H 0.162      
15 C -0.660      
16 H 0.164      
17 H 0.164      
18 H 0.166      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.326 -1.816 0.000 1.845
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -45.191 3.715 0.000
y 3.715 -52.540 0.000
z 0.000 0.000 -48.904
Traceless
 xyz
x 5.531 3.715 0.000
y 3.715 -5.492 0.000
z 0.000 0.000 -0.038
Polar
3z2-r2-0.077
x2-y27.348
xy3.715
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.532 -1.954 0.000
y -1.954 11.802 0.000
z 0.000 0.000 9.978


<r2> (average value of r2) Å2
<r2> 410.571
(<r2>)1/2 20.263