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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP3/6-31+G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP3/6-31+G**
 hartrees
Energy at 0K-397.914384
Energy at 298.15K-397.924489
HF Energy-396.752098
Nuclear repulsion energy325.558713
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP3/6-31+G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3928 3655 55.81      
2 A 3886 3616 87.04      
3 A 3708 3451 7.77      
4 A 3609 3358 2.47      
5 A 3223 2999 16.16      
6 A 3158 2938 10.81      
7 A 3109 2893 38.67      
8 A 1876 1745 293.19      
9 A 1717 1598 41.75      
10 A 1560 1451 3.56      
11 A 1473 1370 22.39      
12 A 1455 1354 44.19      
13 A 1427 1328 39.03      
14 A 1418 1319 10.05      
15 A 1354 1260 16.48      
16 A 1278 1190 23.55      
17 A 1223 1138 51.58      
18 A 1202 1118 193.17      
19 A 1168 1087 10.58      
20 A 1132 1053 100.12      
21 A 1065 991 39.82      
22 A 1021 950 2.30      
23 A 899 837 175.33      
24 A 836 778 26.10      
25 A 763 710 23.05      
26 A 628 584 87.12      
27 A 599 558 41.57      
28 A 532 495 172.64      
29 A 512 477 58.28      
30 A 463 431 6.77      
31 A 304 282 7.71      
32 A 290 270 24.25      
33 A 275 256 23.17      
34 A 215 201 1.45      
35 A 168 157 4.59      
36 A 43 40 1.34      

Unscaled Zero Point Vibrational Energy (zpe) 25758.2 cm-1
Scaled (by 0.9305) Zero Point Vibrational Energy (zpe) 23968.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP3/6-31+G**
ABC
0.11738 0.07772 0.05246

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP3/6-31+G**

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.793 -0.533 0.018
O2 2.066 -0.337 -0.380
O3 0.422 -1.548 0.568
C4 -0.092 0.670 -0.308
C5 -1.518 0.431 0.188
O6 -2.110 -0.712 -0.394
N7 0.413 1.930 0.229
H8 2.575 -1.127 -0.156
H9 -0.122 0.749 -1.397
H10 -1.516 0.374 1.283
H11 -2.115 1.293 -0.100
H12 -1.672 -1.489 -0.033
H13 1.308 2.174 -0.175
H14 0.524 1.887 1.235

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34791.21301.52812.50982.93772.50121.88602.11712.78483.43552.64472.76182.7221
O21.34792.25112.38213.70924.19302.87110.96582.64614.01284.49593.92722.63093.1516
O31.21302.25112.43942.79742.83523.49502.30973.07152.82193.86712.17993.89733.5008
C41.52812.38212.43941.52902.44771.45993.21881.09262.15542.12702.68962.05852.0589
C52.50983.70922.79741.52901.41232.44564.39272.13581.09611.08731.93823.33992.7178
O62.93774.19302.83522.44771.41233.70634.70932.66302.08392.02600.96224.47854.0429
N72.50122.87113.49501.45992.44563.70633.76372.07982.69362.62794.01341.01101.0129
H81.88600.96582.30973.21884.39274.70933.76373.51184.58885.27724.26433.53553.9016
H92.11712.64613.07151.09262.13582.66302.07983.51183.04362.43853.04492.35992.9391
H102.78484.01282.82192.15541.09612.08392.69364.58883.04361.76502.28553.65212.5404
H113.43554.49593.86712.12701.08732.02602.62795.27722.43851.76502.81723.53483.0164
H122.64473.92722.17992.68961.93820.96224.01344.26433.04492.28552.81724.72394.2220
H132.76182.63093.89732.05853.33994.47851.01103.53552.35993.65213.53484.72391.6380
H142.72213.15163.50082.05892.71784.04291.01293.90162.93912.54043.01644.22201.6380

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.064 C1 C4 C5 110.368
C1 C4 N7 113.647 C1 C4 H9 106.582
O2 C1 O3 122.970 O2 C1 C4 111.690
O3 C1 C4 125.340 C4 C5 O6 112.589
C4 C5 H10 109.277 C4 C5 H11 107.574
C4 N7 H13 111.545 C4 N7 H14 111.459
C5 C4 N7 109.794 C5 C4 H9 107.954
C5 O6 H12 107.918 O6 C5 H10 111.739
O6 C5 H11 107.581 N7 C4 H9 108.277
H10 C5 H11 107.873 H13 N7 H14 108.060
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability