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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: BLYP/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at BLYP/cc-pVDZ
 hartrees
Energy at 0K-595.807384
Energy at 298.15K-595.820072
Nuclear repulsion energy283.008655
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3016 3021 41.19      
2 A' 2965 2970 42.21      
3 A' 2946 2951 39.33      
4 A' 2941 2946 39.28      
5 A' 2931 2936 21.63      
6 A' 2920 2925 8.85      
7 A' 2568 2572 15.31      
8 A' 1448 1450 2.24      
9 A' 1438 1440 0.20      
10 A' 1425 1427 0.69      
11 A' 1423 1425 0.84      
12 A' 1419 1421 0.07      
13 A' 1364 1366 0.28      
14 A' 1349 1351 0.32      
15 A' 1324 1326 9.71      
16 A' 1261 1263 3.10      
17 A' 1193 1195 32.40      
18 A' 1097 1099 1.97      
19 A' 1035 1037 0.29      
20 A' 1025 1027 0.67      
21 A' 991 993 0.12      
22 A' 880 882 0.49      
23 A' 828 829 0.56      
24 A' 690 692 5.46      
25 A' 425 425 1.44      
26 A' 336 337 0.19      
27 A' 238 238 1.07      
28 A' 114 114 0.82      
29 A" 3018 3023 45.74      
30 A" 3009 3014 53.01      
31 A" 2979 2984 39.37      
32 A" 2962 2967 8.22      
33 A" 2942 2947 0.95      
34 A" 1433 1435 4.92      
35 A" 1288 1290 0.49      
36 A" 1284 1286 0.19      
37 A" 1240 1242 0.25      
38 A" 1177 1179 0.11      
39 A" 1035 1037 1.59      
40 A" 932 934 0.04      
41 A" 819 820 1.40      
42 A" 747 748 0.15      
43 A" 729 730 3.75      
44 A" 252 252 0.02      
45 A" 192 192 12.98      
46 A" 148 149 0.79      
47 A" 103 103 1.60      
48 A" 66 66 1.08      

Unscaled Zero Point Vibrational Energy (zpe) 33971.1 cm-1
Scaled (by 1.0016) Zero Point Vibrational Energy (zpe) 34025.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/cc-pVDZ
ABC
0.46619 0.02588 0.02511

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.460 1.691 0.000
H2 -3.711 1.134 0.000
C3 -1.513 0.072 0.000
H4 -1.804 -0.507 0.900
H5 -1.804 -0.507 -0.900
C6 0.000 0.354 0.000
H7 0.259 0.969 -0.890
H8 0.259 0.969 0.890
C9 0.846 -0.939 0.000
H10 0.579 -1.555 0.889
H11 0.579 -1.555 -0.889
C12 2.368 -0.677 0.000
H13 2.633 -0.061 0.888
H14 2.633 -0.061 -0.888
C15 3.208 -1.970 0.000
H16 2.993 -2.591 0.895
H17 2.993 -2.591 -0.895
H18 4.295 -1.747 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.36981.87562.46382.46382.79962.95062.95064.22424.53454.53455.37735.45825.45826.74746.99126.99127.5794
H21.36982.44152.67222.67223.79234.07214.07215.00645.14095.14096.34326.51626.51627.58377.72217.72218.5088
C31.87562.44151.10851.10851.53892.17592.17592.56612.79532.79533.95224.24154.24155.14365.31035.31036.0859
H42.46382.67221.10851.79912.19173.10382.53572.83102.60323.15854.27064.45844.80355.29795.23025.52956.2880
H52.46382.67221.10851.79912.19172.53573.10382.83103.15852.60324.27064.80354.45845.29795.52955.23026.2880
C62.79963.79231.53892.19172.19171.11211.11211.54542.18422.18422.58282.80922.80923.96154.29394.29394.7815
H72.95064.07212.17593.10382.53571.11211.78062.18543.10412.54332.81943.13972.58744.25724.83074.48884.9454
H82.95064.07212.17592.53573.10381.11211.78062.18542.54333.10412.81942.58743.13974.25724.48884.83074.9454
C94.22425.00642.56612.83102.83101.54542.18542.18541.11371.11371.54442.18002.18002.57752.85362.85363.5426
H104.53455.14092.79532.60323.15852.18423.10412.54331.11371.77842.18132.53883.09912.80602.62713.17563.8252
H114.53455.14092.79533.15852.60322.18422.54333.10411.11371.77842.18133.09912.53882.80603.17562.62713.8252
C125.37736.34323.95224.27064.27062.58282.81942.81941.54442.18132.18131.11291.11291.54142.20342.20342.2041
H135.45826.51624.24154.45844.80352.80923.13972.58742.18002.53883.09911.11291.77632.18212.55563.11612.5287
H145.45826.51624.24154.80354.45842.80922.58743.13972.18003.09912.53881.11291.77632.18213.11612.55562.5287
C156.74747.58375.14365.29795.29793.96154.25724.25722.57752.80602.80601.54142.18212.18211.11071.11071.1091
H166.99127.72215.31035.23025.52954.29394.83074.48882.85362.62713.17562.20342.55563.11611.11071.78971.7909
H176.99127.72215.31035.52955.23024.29394.48884.83072.85363.17562.62712.20343.11612.55561.11071.78971.7909
H187.57948.50886.08596.28806.28804.78154.94544.94543.54263.82523.82522.20412.52872.52871.10911.79091.7909

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 108.558 S1 C3 H5 108.558
S1 C3 C6 109.758 H2 S1 C3 96.333
C3 C6 H7 109.275 C3 C6 H8 109.275
C3 C6 C9 112.606 H4 C3 H5 108.481
H4 C3 C6 110.713 H5 C3 C6 110.713
C6 C9 H10 109.373 C6 C9 H11 109.373
C6 C9 C12 113.421 H7 C6 H8 106.369
H7 C6 C9 109.561 H8 C6 C9 109.561
C9 C12 H13 109.165 C9 C12 H14 109.165
C9 C12 C15 113.289 H10 C9 H11 105.954
H10 C9 C12 109.224 H11 C9 C12 109.224
C12 C15 H16 111.330 C12 C15 H17 111.330
C12 C15 H18 111.483 H13 C12 H14 105.887
H13 C12 C15 109.533 H14 C12 C15 109.533
H16 C15 H17 107.352 H16 C15 H18 107.568
H17 C15 H18 107.568
Electronic energy levels

Electronic state

Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.098      
2 H 0.056      
3 C -0.074      
4 H 0.032      
5 H 0.032      
6 C 0.031      
7 H 0.004      
8 H 0.004      
9 C 0.015      
10 H -0.010      
11 H -0.010      
12 C -0.004      
13 H -0.007      
14 H -0.007      
15 C 0.024      
16 H 0.005      
17 H 0.005      
18 H 0.000      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.345 -1.521 0.000 1.559
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -45.574 3.213 0.000
y 3.213 -51.470 0.000
z 0.000 0.000 -48.717
Traceless
 xyz
x 4.520 3.213 0.000
y 3.213 -4.325 0.000
z 0.000 0.000 -0.195
Polar
3z2-r2-0.390
x2-y25.896
xy3.213
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.074 -2.141 0.000
y -2.141 11.463 0.000
z 0.000 0.000 8.854


<r2> (average value of r2) Å2
<r2> 0.000
(<r2>)1/2 0.000