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All results from a given calculation for C5H4N4 (purine)

using model chemistry: BLYP/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at BLYP/cc-pVDZ
 hartrees
Energy at 0K-411.849844
Energy at 298.15K-411.857483
HF Energy-411.849844
Nuclear repulsion energy407.695540
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3511 3516 56.35      
2 A' 3156 3161 0.94      
3 A' 3085 3090 19.32      
4 A' 3073 3077 20.57      
5 A' 1577 1580 49.37      
6 A' 1545 1548 54.57      
7 A' 1447 1450 20.93      
8 A' 1420 1422 2.29      
9 A' 1367 1369 43.44      
10 A' 1354 1357 10.84      
11 A' 1307 1309 47.89      
12 A' 1262 1264 28.52      
13 A' 1247 1249 18.28      
14 A' 1224 1226 28.50      
15 A' 1157 1159 7.41      
16 A' 1084 1085 5.13      
17 A' 1027 1029 13.38      
18 A' 910 911 1.63      
19 A' 877 879 11.62      
20 A' 777 778 11.61      
21 A' 636 637 0.57      
22 A' 551 552 3.16      
23 A' 428 429 10.73      
24 A" 950 951 0.48      
25 A" 898 900 7.56      
26 A" 827 829 4.85      
27 A" 787 789 8.04      
28 A" 641 642 2.77      
29 A" 604 605 22.47      
30 A" 508 509 72.45      
31 A" 400 401 3.21      
32 A" 235 236 0.65      
33 A" 224 225 3.69      

Unscaled Zero Point Vibrational Energy (zpe) 20047.7 cm-1
Scaled (by 1.0016) Zero Point Vibrational Energy (zpe) 20079.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/cc-pVDZ
ABC
0.13454 0.05730 0.04018

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.838 -1.271 0.000
C2 -2.127 0.067 0.000
N3 -1.285 1.115 0.000
C4 0.000 0.713 0.000
C5 0.458 -0.634 0.000
C6 -0.546 -1.627 0.000
N7 1.855 -0.700 0.000
C8 2.209 0.576 0.000
N9 1.142 1.485 0.000
H10 -3.199 0.310 0.000
H11 -0.313 -2.703 0.000
H12 3.248 0.916 0.000
H13 1.185 2.504 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36892.44942.70492.38341.34083.73684.44874.05952.08572.09215.53684.8368
C21.36891.34402.22262.67862.31704.05454.36503.56281.09913.31115.44154.1118
N32.44941.34401.34632.46972.83953.62653.53482.45472.07603.93994.53762.8339
C42.70492.22261.34631.42332.40252.33172.21281.37843.22383.43063.25462.1478
C52.38342.67862.46971.42331.41161.39772.12812.22723.77702.20803.19153.2218
C61.34082.31702.83952.40251.41162.57273.52683.54013.28471.10144.56704.4789
N73.73684.05453.62652.33171.39772.57271.32492.29925.15312.95142.13403.2740
C84.44874.36503.53482.21282.12813.52681.32491.40175.41364.13701.09372.1829
N94.05953.56282.45471.37842.22723.54012.29921.40174.49654.43412.18241.0198
H102.08571.09912.07603.22383.77703.28475.15315.41364.49654.17196.47524.9020
H112.09213.31113.93993.43062.20801.10142.95144.13704.43414.17195.07755.4188
H125.53685.44154.53763.25463.19154.56702.13401.09372.18246.47525.07752.6041
H134.83684.11182.83392.14783.22184.47893.27402.18291.01984.90205.41882.6041

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.068 N1 C2 H10 114.927
N1 C6 C5 119.962 N1 C6 H11 117.557
C2 N1 C6 117.533 C2 N3 C4 111.406
N3 C2 H10 116.004 N3 C4 C5 126.159
N3 C4 N9 128.548 C4 C5 C6 115.871
C4 C5 N7 111.495 C4 N9 C8 105.482
C4 N9 H13 126.517 C5 C4 N9 105.294
C5 C6 H11 122.480 C5 N7 C8 102.792
C6 C5 N7 132.633 N7 C8 N9 114.938
N7 C8 H12 123.572 C8 N9 H13 128.001
N9 C8 H12 121.490
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.148      
2 C 0.104      
3 N -0.158      
4 C 0.126      
5 C 0.014      
6 C 0.098      
7 N -0.173      
8 C 0.133      
9 N -0.047      
10 H -0.012      
11 H -0.016      
12 H -0.004      
13 H 0.085      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.140 2.917 0.000 3.618
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.376 5.910 0.000
y 5.910 -47.120 0.000
z 0.000 0.000 -51.244
Traceless
 xyz
x -1.195 5.910 0.000
y 5.910 3.691 0.000
z 0.000 0.000 -2.496
Polar
3z2-r2-4.992
x2-y2-3.257
xy5.910
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.887 1.537 0.000
y 1.537 12.103 0.000
z 0.000 0.000 4.653


<r2> (average value of r2) Å2
<r2> 259.051
(<r2>)1/2 16.095