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All results from a given calculation for C5H4N4 (purine)

using model chemistry: MP2/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at MP2/cc-pVDZ
 hartrees
Energy at 0K-410.781245
Energy at 298.15K-410.789091
HF Energy-409.498208
Nuclear repulsion energy409.855657
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3669 3495 115.44      
2 A' 3287 3131 0.34      
3 A' 3231 3078 15.96      
4 A' 3216 3064 10.76      
5 A' 1663 1584 39.20      
6 A' 1634 1557 29.12      
7 A' 1514 1442 23.63      
8 A' 1500 1429 26.79      
9 A' 1448 1379 54.21      
10 A' 1425 1357 15.41      
11 A' 1405 1338 67.09      
12 A' 1346 1282 28.97      
13 A' 1322 1259 5.43      
14 A' 1279 1219 23.25      
15 A' 1205 1148 7.26      
16 A' 1125 1071 7.15      
17 A' 1094 1042 6.69      
18 A' 939 894 0.51      
19 A' 913 870 12.37      
20 A' 802 764 11.52      
21 A' 653 622 0.86      
22 A' 564 538 4.13      
23 A' 438 417 13.31      
24 A" 977 930 0.26      
25 A" 921 877 14.37      
26 A" 867 825 9.77      
27 A" 798 760 3.66      
28 A" 664 633 1.43      
29 A" 626 596 30.72      
30 A" 519 494 83.78      
31 A" 420 400 3.76      
32 A" 245 233 0.85      
33 A" 232 221 4.18      

Unscaled Zero Point Vibrational Energy (zpe) 20969.5 cm-1
Scaled (by 0.9525) Zero Point Vibrational Energy (zpe) 19973.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/cc-pVDZ
ABC
0.13543 0.05806 0.04064

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.822 -1.271 0.000
C2 -2.111 0.062 0.000
N3 -1.279 1.111 0.000
C4 0.000 0.711 0.000
C5 0.460 -0.629 0.000
C6 -0.535 -1.623 0.000
N7 1.844 -0.697 0.000
C8 2.184 0.582 0.000
N9 1.129 1.481 0.000
H10 -3.177 0.300 0.000
H11 -0.302 -2.694 0.000
H12 3.218 0.926 0.000
H13 1.170 2.495 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36432.44312.69262.37121.33453.71144.41484.03502.07482.08205.49834.8107
C21.36431.33812.20812.66202.30734.02734.32653.53631.09273.29645.39804.0845
N32.44311.33811.34042.45992.83353.60933.50382.43622.06373.92794.50082.8136
C42.69262.20811.34041.41632.39482.32052.18821.36613.20363.41783.22492.1339
C52.37122.66202.45991.41631.40711.38602.10722.21263.75392.20113.16573.2037
C61.33452.30732.83352.39481.40712.55333.50173.52173.26801.09544.53694.4578
N73.71144.02733.60932.32051.38602.55331.32432.29265.11962.93112.12653.2633
C84.41484.32653.50382.18822.10723.50171.32431.38615.36904.11271.08892.1653
N94.03503.53632.43621.36612.21263.52172.29261.38614.46474.41252.16141.0157
H102.07481.09272.06373.20363.75393.26805.11965.36904.46474.15086.42544.8700
H112.08203.29643.92793.41782.20111.09542.93114.11274.41254.15085.04885.3938
H125.49835.39804.50083.22493.16574.53692.12651.08892.16146.42545.04882.5799
H134.81074.08452.81362.13393.20374.45783.26332.16531.01574.87005.39382.5799

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.389 N1 C2 H10 114.779
N1 C6 C5 119.719 N1 C6 H11 117.590
C2 N1 C6 117.497 C2 N3 C4 111.054
N3 C2 H10 115.832 N3 C4 C5 126.312
N3 C4 N9 128.349 C4 C5 C6 116.029
C4 C5 N7 111.799 C4 N9 C8 105.320
C4 N9 H13 126.625 C5 C4 N9 105.339
C5 C6 H11 122.691 C5 N7 C8 102.036
C6 C5 N7 132.171 N7 C8 N9 115.506
N7 C8 H12 123.276 C8 N9 H13 128.054
N9 C8 H12 121.218
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability