return to home page Computational Chemistry Comparison and Benchmark DataBase Release 22 (May 2022) Standard Reference Database 101 National Institute of Standards and Technology
You are here: Calculated > Energy > Optimized > Energy

All results from a given calculation for C5H4N4 (purine)

using model chemistry: LSDA/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at LSDA/cc-pVDZ
 hartrees
Energy at 0K-409.713399
Energy at 298.15K-409.721175
HF Energy-409.713399
Nuclear repulsion energy413.090650
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at LSDA/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3538 3499 90.72      
2 A' 3170 3135 0.61      
3 A' 3096 3062 9.97      
4 A' 3084 3050 11.42      
5 A' 1661 1643 51.53      
6 A' 1618 1601 59.85      
7 A' 1511 1494 26.80      
8 A' 1478 1462 3.15      
9 A' 1433 1417 57.13      
10 A' 1382 1367 12.45      
11 A' 1378 1363 71.57      
12 A' 1339 1324 17.98      
13 A' 1279 1265 3.30      
14 A' 1254 1240 14.82      
15 A' 1176 1163 12.15      
16 A' 1127 1114 5.76      
17 A' 1052 1041 11.69      
18 A' 926 915 2.48      
19 A' 893 883 10.30      
20 A' 803 794 13.79      
21 A' 645 638 0.71      
22 A' 557 551 4.91      
23 A' 435 430 12.64      
24 A" 953 942 0.50      
25 A" 907 897 9.63      
26 A" 839 830 2.43      
27 A" 808 799 12.71      
28 A" 656 648 3.93      
29 A" 614 608 26.49      
30 A" 561 554 77.39      
31 A" 402 397 1.62      
32 A" 236 233 0.47      
33 A" 226 224 4.92      

Unscaled Zero Point Vibrational Energy (zpe) 20515.8 cm-1
Scaled (by 0.989) Zero Point Vibrational Energy (zpe) 20290.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at LSDA/cc-pVDZ
ABC
0.13803 0.05892 0.04129

See section I.F.4 to change rotational constant units
Geometric Data calculated at LSDA/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.809 -1.255 0.000
C2 -2.098 0.064 0.000
N3 -1.267 1.097 0.000
C4 0.000 0.703 0.000
C5 0.454 -0.627 0.000
C6 -0.534 -1.611 0.000
N7 1.827 -0.686 0.000
C8 2.175 0.575 0.000
N9 1.122 1.466 0.000
H10 -3.173 0.306 0.000
H11 -0.302 -2.689 0.000
H12 3.218 0.914 0.000
H13 1.161 2.486 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34962.41372.66532.34831.32363.67994.38403.99872.07212.08035.47474.7768
C21.34961.32662.19332.64402.29113.99604.30373.51181.10153.28685.38374.0613
N32.41371.32661.32662.43632.80543.57103.48122.41652.06393.90764.48852.7973
C42.66532.19331.32661.40562.37452.29532.17891.35663.19743.40593.22502.1283
C52.34832.64402.43631.40561.39421.37402.09942.19733.74482.19663.16463.1930
C61.32362.29112.80542.37451.39422.53543.48103.49403.26091.10334.52244.4341
N73.67993.99603.57102.29531.37402.53541.30872.26535.09702.92342.12053.2419
C84.38404.30373.48122.17892.09943.48101.30871.38005.35464.09831.09662.1635
N93.99873.51182.41651.35662.19733.49402.26531.38004.44824.39292.16811.0210
H102.07211.10152.06393.19743.74483.26095.09705.35464.44824.14816.41964.8519
H112.08033.28683.90763.40592.19661.10332.92344.09834.39294.14815.03775.3789
H125.47475.38374.48853.22503.16464.52242.12051.09662.16816.41965.03772.5889
H134.77684.06132.79732.12833.19304.43413.24192.16351.02104.85195.37892.5889

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.819 N1 C2 H10 115.059
N1 C6 C5 119.531 N1 C6 H11 117.720
C2 N1 C6 117.981 C2 N3 C4 111.511
N3 C2 H10 116.122 N3 C4 C5 126.146
N3 C4 N9 128.467 C4 C5 C6 116.011
C4 C5 N7 111.320 C4 N9 C8 105.538
C4 N9 H13 126.480 C5 C4 N9 105.387
C5 C6 H11 122.749 C5 N7 C8 102.963
C6 C5 N7 132.669 N7 C8 N9 114.792
N7 C8 H12 123.433 C8 N9 H13 127.982
N9 C8 H12 121.775
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at LSDA/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.127      
2 C 0.016      
3 N -0.125      
4 C 0.096      
5 C -0.038      
6 C 0.039      
7 N -0.146      
8 C 0.058      
9 N -0.075      
10 H 0.054      
11 H 0.052      
12 H 0.062      
13 H 0.134      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.184 3.040 0.000 3.743
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.739 6.070 0.000
y 6.070 -46.352 0.000
z 0.000 0.000 -51.315
Traceless
 xyz
x -0.906 6.070 0.000
y 6.070 4.175 0.000
z 0.000 0.000 -3.270
Polar
3z2-r2-6.540
x2-y2-3.387
xy6.070
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.467 1.465 0.000
y 1.465 11.799 0.000
z 0.000 0.000 4.666


<r2> (average value of r2) Å2
<r2> 252.845
(<r2>)1/2 15.901