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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HSEh1PBE/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HSEh1PBE/cc-pVDZ
 hartrees
Energy at 0K-411.554014
Energy at 298.15K-411.561952
HF Energy-411.554014
Nuclear repulsion energy413.001609
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3674 3534 98.64      
2 A' 3266 3141 0.22      
3 A' 3200 3078 14.12      
4 A' 3191 3069 14.73      
5 A' 1693 1629 60.73      
6 A' 1656 1593 79.91      
7 A' 1555 1496 27.80      
8 A' 1509 1452 3.84      
9 A' 1454 1399 72.14      
10 A' 1429 1375 17.83      
11 A' 1385 1333 60.93      
12 A' 1341 1290 20.15      
13 A' 1322 1271 6.54      
14 A' 1290 1241 22.60      
15 A' 1214 1168 9.22      
16 A' 1150 1106 6.23      
17 A' 1091 1049 12.81      
18 A' 952 916 1.82      
19 A' 919 884 11.93      
20 A' 818 787 14.77      
21 A' 662 637 0.51      
22 A' 573 551 4.13      
23 A' 447 430 12.26      
24 A" 1001 963 0.34      
25 A" 948 912 8.65      
26 A" 887 853 5.56      
27 A" 829 797 9.19      
28 A" 671 645 5.56      
29 A" 629 605 23.61      
30 A" 541 521 86.17      
31 A" 421 405 3.98      
32 A" 249 239 0.46      
33 A" 235 226 4.95      

Unscaled Zero Point Vibrational Energy (zpe) 21101.0 cm-1
Scaled (by 0.9619) Zero Point Vibrational Energy (zpe) 20297.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/cc-pVDZ
ABC
0.13819 0.05876 0.04123

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.813 -1.254 0.000
C2 -2.096 0.066 0.000
N3 -1.267 1.101 0.000
C4 0.000 0.703 0.000
C5 0.453 -0.625 0.000
C6 -0.538 -1.607 0.000
N7 1.831 -0.689 0.000
C8 2.176 0.569 0.000
N9 1.125 1.464 0.000
H10 -3.160 0.308 0.000
H11 -0.311 -2.676 0.000
H12 3.209 0.905 0.000
H13 1.168 2.474 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34992.41662.66732.35201.32303.68774.38584.00192.06192.06885.46674.7732
C21.34991.32542.19062.64132.28633.99924.30163.51081.09093.27225.37134.0562
N32.41661.32541.32832.43662.80393.57813.48412.41922.05213.89584.48092.7961
C42.66732.19061.32831.40272.37152.30002.18021.35793.18463.39303.21572.1218
C52.35202.64132.43661.40271.39541.37942.09602.19403.73162.18903.15223.1802
C61.32302.28632.80392.37151.39542.54083.47873.49213.24651.09304.51144.4232
N73.68773.99923.57812.30001.37942.54081.30452.26615.08962.92172.10733.2318
C84.38584.30163.48412.18022.09603.47871.30451.38095.34254.08841.08662.1551
N94.00193.51082.41921.35792.19403.49212.26611.38094.43784.38182.15851.0109
H102.06191.09092.05213.18463.73163.24655.08965.34254.43784.12546.39734.8401
H112.06883.27223.89583.39302.18901.09302.92174.08844.38184.12545.02155.3582
H125.46675.37134.48093.21573.15224.51142.10731.08662.15856.39735.02152.5745
H134.77324.05622.79612.12183.18024.42323.23182.15511.01094.84015.35822.5745

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.193 N1 C2 H10 114.878
N1 C6 C5 119.782 N1 C6 H11 117.482
C2 N1 C6 117.586 C2 N3 C4 111.278
N3 C2 H10 115.930 N3 C4 C5 126.279
N3 C4 N9 128.473 C4 C5 C6 115.882
C4 C5 N7 111.522 C4 N9 C8 105.501
C4 N9 H13 126.579 C5 C4 N9 105.248
C5 C6 H11 122.736 C5 N7 C8 102.661
C6 C5 N7 132.595 N7 C8 N9 115.068
N7 C8 H12 123.346 C8 N9 H13 127.921
N9 C8 H12 121.586
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.236      
2 C 0.136      
3 N -0.248      
4 C 0.243      
5 C -0.029      
6 C 0.140      
7 N -0.249      
8 C 0.160      
9 N -0.153      
10 H 0.037      
11 H 0.037      
12 H 0.045      
13 H 0.116      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.179 2.976 0.000 3.689
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.614 6.112 0.000
y 6.112 -46.444 0.000
z 0.000 0.000 -51.326
Traceless
 xyz
x -0.729 6.112 0.000
y 6.112 4.026 0.000
z 0.000 0.000 -3.297
Polar
3z2-r2-6.593
x2-y2-3.170
xy6.112
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.930 1.421 0.000
y 1.421 11.514 0.000
z 0.000 0.000 4.646


<r2> (average value of r2) Å2
<r2> 253.048
(<r2>)1/2 15.907