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All results from a given calculation for C5H4N4 (purine)

using model chemistry: M06-2X/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at M06-2X/cc-pVDZ
 hartrees
Energy at 0K-411.837643
Energy at 298.15K-411.845607
HF Energy-411.837643
Nuclear repulsion energy412.818466
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at M06-2X/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3663 3663 122.82      
2 A' 3262 3262 0.12      
3 A' 3229 3229 14.98      
4 A' 3206 3206 9.74      
5 A' 1707 1707 66.78      
6 A' 1673 1673 85.62      
7 A' 1568 1568 32.38      
8 A' 1520 1520 3.72      
9 A' 1461 1461 93.81      
10 A' 1428 1428 17.91      
11 A' 1387 1387 55.81      
12 A' 1326 1326 8.91      
13 A' 1317 1317 5.92      
14 A' 1285 1285 39.83      
15 A' 1214 1214 9.82      
16 A' 1154 1154 6.65      
17 A' 1083 1083 13.85      
18 A' 954 954 1.37      
19 A' 921 921 11.95      
20 A' 820 820 15.62      
21 A' 664 664 0.44      
22 A' 573 573 4.02      
23 A' 445 445 12.76      
24 A" 1021 1021 0.21      
25 A" 966 966 9.83      
26 A" 905 905 6.02      
27 A" 833 833 8.86      
28 A" 671 671 6.74      
29 A" 632 632 21.15      
30 A" 539 539 91.17      
31 A" 428 428 5.45      
32 A" 254 254 0.64      
33 A" 235 235 5.44      

Unscaled Zero Point Vibrational Energy (zpe) 21171.2 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 21171.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at M06-2X/cc-pVDZ
ABC
0.13819 0.05867 0.04118

See section I.F.4 to change rotational constant units
Geometric Data calculated at M06-2X/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.813 -1.254 0.000
C2 -2.098 0.067 0.000
N3 -1.269 1.100 0.000
C4 0.000 0.702 0.000
C5 0.453 -0.624 0.000
C6 -0.539 -1.607 0.000
N7 1.833 -0.688 0.000
C8 2.178 0.568 0.000
N9 1.126 1.464 0.000
H10 -3.161 0.308 0.000
H11 -0.312 -2.675 0.000
H12 3.211 0.903 0.000
H13 1.169 2.474 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35162.41542.66702.35171.32223.68954.38754.00282.06322.06745.46754.7745
C21.35161.32392.19222.64292.28824.00284.30583.51361.08973.27305.37474.0586
N32.41541.32391.33012.43622.80363.58003.48832.42262.05073.89424.48462.7996
C42.66702.19221.33011.40102.37142.30002.18241.35933.18553.39153.21732.1235
C52.35172.64292.43621.40101.39671.38162.09732.19353.73192.18913.15283.1801
C61.32222.28822.80362.37141.39672.54393.48093.49343.24711.09174.51284.4249
N73.68954.00283.58002.30001.38162.54391.30242.26455.09212.92402.10483.2309
C84.38754.30583.48832.18242.09733.48091.30241.38205.34574.08891.08572.1568
N94.00283.51362.42261.35932.19353.49342.26451.38204.43994.38152.15931.0116
H102.06321.08972.05073.18553.73193.24715.09215.34574.43994.12536.39984.8421
H112.06743.27303.89423.39152.18911.09172.92404.08894.38154.12535.02145.3584
H125.46755.37474.48463.21733.15284.51282.10481.08572.15936.39985.02142.5763
H134.77454.05862.79962.12353.18014.42493.23092.15681.01164.84215.35842.5763

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.049 N1 C2 H10 114.949
N1 C6 C5 119.730 N1 C6 H11 117.522
C2 N1 C6 117.690 C2 N3 C4 111.380
N3 C2 H10 116.003 N3 C4 C5 126.238
N3 C4 N9 128.526 C4 C5 C6 115.913
C4 C5 N7 111.493 C4 N9 C8 105.517
C4 N9 H13 126.556 C5 C4 N9 105.236
C5 C6 H11 122.748 C5 N7 C8 102.742
C6 C5 N7 132.594 N7 C8 N9 115.013
N7 C8 H12 123.357 C8 N9 H13 127.927
N9 C8 H12 121.630
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at M06-2X/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.227      
2 C 0.136      
3 N -0.228      
4 C 0.204      
5 C -0.035      
6 C 0.135      
7 N -0.230      
8 C 0.163      
9 N -0.158      
10 H 0.034      
11 H 0.037      
12 H 0.043      
13 H 0.125      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.151 2.944 0.000 3.646
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.569 6.133 0.000
y 6.133 -46.540 0.000
z 0.000 0.000 -51.683
Traceless
 xyz
x -0.457 6.133 0.000
y 6.133 4.086 0.000
z 0.000 0.000 -3.628
Polar
3z2-r2-7.257
x2-y2-3.029
xy6.133
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.626 1.370 0.000
y 1.370 11.374 0.000
z 0.000 0.000 4.599


<r2> (average value of r2) Å2
<r2> 253.383
(<r2>)1/2 15.918