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All results from a given calculation for C5H4N4 (purine)

using model chemistry: PBEPBE/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at PBEPBE/cc-pVDZ
 hartrees
Energy at 0K-411.507442
Energy at 298.15K-411.515119
HF Energy-411.507442
Nuclear repulsion energy409.354138
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3542 3521 67.24      
2 A' 3173 3155 0.37      
3 A' 3101 3083 16.27      
4 A' 3089 3071 16.99      
5 A' 1609 1600 49.20      
6 A' 1575 1566 58.60      
7 A' 1474 1465 22.93      
8 A' 1439 1430 2.75      
9 A' 1390 1382 49.75      
10 A' 1368 1360 12.67      
11 A' 1328 1321 62.73      
12 A' 1295 1287 20.81      
13 A' 1271 1263 8.91      
14 A' 1238 1231 19.78      
15 A' 1165 1158 8.45      
16 A' 1102 1095 5.42      
17 A' 1045 1039 11.50      
18 A' 914 909 1.52      
19 A' 882 877 11.12      
20 A' 785 781 12.15      
21 A' 637 633 0.57      
22 A' 552 548 3.77      
23 A' 430 428 11.34      
24 A" 950 945 0.39      
25 A" 900 895 9.07      
26 A" 831 826 5.25      
27 A" 791 787 9.22      
28 A" 645 641 2.32      
29 A" 606 603 25.31      
30 A" 522 519 73.42      
31 A" 398 395 2.47      
32 A" 233 232 0.37      
33 A" 224 223 4.45      

Unscaled Zero Point Vibrational Energy (zpe) 20250.7 cm-1
Scaled (by 0.9942) Zero Point Vibrational Energy (zpe) 20133.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/cc-pVDZ
ABC
0.13542 0.05785 0.04053

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.830 -1.266 0.000
C2 -2.115 0.066 0.000
N3 -1.279 1.112 0.000
C4 0.000 0.710 0.000
C5 0.458 -0.632 0.000
C6 -0.542 -1.622 0.000
N7 1.847 -0.698 0.000
C8 2.195 0.575 0.000
N9 1.134 1.479 0.000
H10 -3.187 0.309 0.000
H11 -0.311 -2.699 0.000
H12 3.236 0.916 0.000
H13 1.176 2.498 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36312.44172.69332.37401.33573.71994.42644.04002.08012.08785.51534.8172
C21.36311.33912.21062.66612.30734.03464.34023.54281.09973.30195.41754.0920
N32.44171.33911.34042.46162.83153.61163.51532.44052.07083.93244.51862.8190
C42.69332.21061.34041.41832.39402.32212.19951.37033.21253.42343.24222.1401
C52.37402.66612.46161.41831.40691.39012.11582.21693.76512.20543.17983.2113
C61.33572.30732.83152.39401.40692.56113.51013.52483.27521.10194.55084.4636
N73.71994.03463.61162.32211.39012.56111.32022.29065.13382.94282.12913.2652
C84.42644.34023.51532.19952.11583.51011.32021.39395.38944.12371.09452.1757
N94.04003.54282.44051.37032.21693.52482.29061.39394.47714.42112.17581.0196
H102.08011.09972.07083.21253.76513.27525.13385.38944.47714.16236.45174.8819
H112.08783.30193.93243.42342.20541.10192.94284.12374.42114.16235.06425.4056
H125.51535.41754.51863.24223.17984.55082.12911.09452.17586.45175.06422.5968
H134.81724.09202.81902.14013.21134.46363.26522.17571.01964.88195.40562.5968

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.274 N1 C2 H10 114.842
N1 C6 C5 119.879 N1 C6 H11 117.528
C2 N1 C6 117.507 C2 N3 C4 111.182
N3 C2 H10 115.884 N3 C4 C5 126.307
N3 C4 N9 128.396 C4 C5 C6 115.852
C4 C5 N7 111.553 C4 N9 C8 105.445
C4 N9 H13 126.520 C5 C4 N9 105.296
C5 C6 H11 122.593 C5 N7 C8 102.609
C6 C5 N7 132.595 N7 C8 N9 115.096
N7 C8 H12 123.433 C8 N9 H13 128.035
N9 C8 H12 121.471
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.186      
2 C 0.105      
3 N -0.199      
4 C 0.190      
5 C -0.011      
6 C 0.113      
7 N -0.208      
8 C 0.136      
9 N -0.097      
10 H 0.018      
11 H 0.015      
12 H 0.025      
13 H 0.100      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.157 2.960 0.000 3.663
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.904 5.987 0.000
y 5.987 -46.637 0.000
z 0.000 0.000 -51.317
Traceless
 xyz
x -0.927 5.987 0.000
y 5.987 3.974 0.000
z 0.000 0.000 -3.047
Polar
3z2-r2-6.093
x2-y2-3.267
xy5.987
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.741 1.499 0.000
y 1.499 12.003 0.000
z 0.000 0.000 4.690


<r2> (average value of r2) Å2
<r2> 256.952
(<r2>)1/2 16.030