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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/cc-pVDZ
 hartrees
Energy at 0K-411.974438
Energy at 298.15K-411.982319
HF Energy-411.974438
Nuclear repulsion energy411.355787
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3633 3524 85.26      
2 A' 3238 3141 0.43      
3 A' 3174 3078 16.08      
4 A' 3163 3069 16.58      
5 A' 1657 1607 58.63      
6 A' 1623 1574 73.03      
7 A' 1523 1478 25.76      
8 A' 1484 1439 3.12      
9 A' 1427 1384 60.37      
10 A' 1411 1368 15.86      
11 A' 1362 1322 60.09      
12 A' 1310 1271 14.62      
13 A' 1301 1262 16.05      
14 A' 1273 1235 31.45      
15 A' 1202 1166 8.23      
16 A' 1131 1098 5.85      
17 A' 1072 1040 14.05      
18 A' 944 916 1.88      
19 A' 911 884 12.23      
20 A' 808 784 14.01      
21 A' 658 638 0.52      
22 A' 570 552 3.61      
23 A' 444 430 11.62      
24 A" 993 964 0.41      
25 A" 941 913 7.40      
26 A" 876 850 5.03      
27 A" 821 797 8.14      
28 A" 665 645 5.58      
29 A" 624 605 21.53      
30 A" 528 512 83.28      
31 A" 420 408 4.52      
32 A" 248 240 0.62      
33 A" 233 226 4.28      

Unscaled Zero Point Vibrational Energy (zpe) 20834.0 cm-1
Scaled (by 0.97) Zero Point Vibrational Energy (zpe) 20208.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/cc-pVDZ
ABC
0.13723 0.05825 0.04089

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.822 -1.259 0.000
C2 -2.107 0.067 0.000
N3 -1.273 1.104 0.000
C4 0.000 0.706 0.000
C5 0.454 -0.627 0.000
C6 -0.541 -1.612 0.000
N7 1.839 -0.692 0.000
C8 2.188 0.570 0.000
N9 1.131 1.471 0.000
H10 -3.171 0.308 0.000
H11 -0.312 -2.682 0.000
H12 3.222 0.906 0.000
H13 1.176 2.482 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35592.42562.67912.36171.32843.70414.40704.02112.06822.07445.48824.7935
C21.35591.33082.20182.65352.29584.01824.32433.52951.09143.28255.39434.0754
N32.42561.33081.33422.44572.81323.59343.50212.43232.05823.90574.49922.8100
C42.67912.20181.33421.40822.38032.31002.19211.36563.19623.40173.22782.1301
C52.36172.65352.44571.40821.40021.38632.10722.20453.74422.19253.16393.1920
C61.32842.29582.81322.38031.40022.55163.49443.50723.25671.09364.52774.4397
N73.70414.01823.59342.31001.38632.55161.31002.27595.10922.92982.11353.2431
C84.40704.32433.50212.19212.10723.49441.31001.38835.36574.10181.08692.1634
N94.02113.52952.43231.36562.20453.50722.27591.38834.45694.39602.16521.0125
H102.06821.09142.05823.19623.74423.25675.10925.36574.45694.13696.42094.8602
H112.07443.28253.90573.40172.19251.09362.92984.10184.39604.13695.03575.3738
H125.48825.39434.49923.22783.16394.52772.11351.08692.16526.42095.03572.5827
H134.79354.07542.81002.13013.19204.43973.24312.16341.01254.86025.37382.5827

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.061 N1 C2 H10 114.930
N1 C6 C5 119.868 N1 C6 H11 117.516
C2 N1 C6 117.579 C2 N3 C4 111.421
N3 C2 H10 116.009 N3 C4 C5 126.180
N3 C4 N9 128.563 C4 C5 C6 115.892
C4 C5 N7 111.502 C4 N9 C8 105.497
C4 N9 H13 126.575 C5 C4 N9 105.257
C5 C6 H11 122.616 C5 N7 C8 102.760
C6 C5 N7 132.606 N7 C8 N9 114.983
N7 C8 H12 123.455 C8 N9 H13 127.928
N9 C8 H12 121.562
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.194      
2 C 0.129      
3 N -0.202      
4 C 0.178      
5 C -0.006      
6 C 0.122      
7 N -0.210      
8 C 0.152      
9 N -0.100      
10 H 0.008      
11 H 0.007      
12 H 0.016      
13 H 0.100      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.160 2.940 0.000 3.648
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.036 6.024 0.000
y 6.024 -46.844 0.000
z 0.000 0.000 -51.232
Traceless
 xyz
x -0.998 6.024 0.000
y 6.024 3.790 0.000
z 0.000 0.000 -2.792
Polar
3z2-r2-5.584
x2-y2-3.192
xy6.024
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.119 1.455 0.000
y 1.455 11.633 0.000
z 0.000 0.000 4.612


<r2> (average value of r2) Å2
<r2> 255.018
(<r2>)1/2 15.969