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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HF/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HF/cc-pVDZ
 hartrees
Energy at 0K-396.762000
Energy at 298.15K-396.772458
HF Energy-396.762000
Nuclear repulsion energy328.088826
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 4128 3748 99.71      
2 A 4081 3705 139.73      
3 A 3810 3459 8.66      
4 A 3722 3380 2.53      
5 A 3279 2977 33.16      
6 A 3210 2915 22.11      
7 A 3159 2869 60.16      
8 A 1997 1813 365.72      
9 A 1794 1629 36.51      
10 A 1617 1468 3.54      
11 A 1562 1418 38.81      
12 A 1540 1398 58.75      
13 A 1509 1370 56.17      
14 A 1493 1356 8.66      
15 A 1433 1302 16.05      
16 A 1348 1224 58.16      
17 A 1308 1187 139.06      
18 A 1283 1165 90.64      
19 A 1230 1117 7.75      
20 A 1211 1100 131.33      
21 A 1122 1019 43.13      
22 A 1076 977 0.24      
23 A 975 885 183.06      
24 A 892 810 27.32      
25 A 813 738 32.41      
26 A 666 605 112.04      
27 A 624 566 17.17      
28 A 569 516 121.02      
29 A 539 489 111.59      
30 A 476 432 6.41      
31 A 335 304 8.00      
32 A 322 293 17.52      
33 A 285 259 24.95      
34 A 233 212 2.50      
35 A 177 161 3.45      
36 A 43 39 1.08      

Unscaled Zero Point Vibrational Energy (zpe) 26929.7 cm-1
Scaled (by 0.908) Zero Point Vibrational Energy (zpe) 24452.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/cc-pVDZ
ABC
0.12184 0.07865 0.05182

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.802 -0.523 0.011
O2 2.056 -0.305 -0.366
O3 0.471 -1.535 0.543
C4 -0.108 0.656 -0.302
C5 -1.525 0.407 0.204
O6 -2.114 -0.711 -0.385
N7 0.395 1.912 0.217
H8 2.569 -1.074 -0.142
H9 -0.145 0.729 -1.392
H10 -1.514 0.328 1.297
H11 -2.128 1.273 -0.061
H12 -1.674 -1.481 -0.053
H13 1.285 2.137 -0.189
H14 0.528 1.863 1.213

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.32721.19041.52162.51302.94862.47701.85722.10542.78253.43712.65592.71082.6845
O21.32722.20272.36783.69484.18912.83060.95132.63863.98914.48153.92332.56673.0860
O31.19042.20272.41852.80472.86703.46302.25493.04132.82453.87302.22683.83183.4628
C41.52162.36782.41851.52572.42921.44883.19081.09262.15542.12622.66162.03632.0381
C52.51303.69482.80471.52571.39372.43984.36702.13451.09611.08811.91093.32382.7114
O62.94864.18912.86702.42921.39373.67914.70292.63942.06582.01030.94694.43904.0192
N72.47702.83063.46301.44882.43983.67913.71082.06802.70612.61733.98341.00421.0061
H81.85720.95132.25493.19084.36704.70293.71083.48944.55085.25104.26343.45833.8239
H92.10542.63863.04131.09262.13452.63942.06803.48943.04442.44953.00312.33942.9187
H102.78253.98912.82452.15541.09612.06582.70614.55083.04441.76452.26283.65002.5561
H113.43714.48153.87302.12621.08812.01032.61735.25102.44951.76452.79123.52343.0038
H122.65593.92332.22682.66161.91090.94693.98344.26343.00312.26282.79124.67654.1988
H132.71082.56673.83182.03633.32384.43901.00423.45832.33943.65003.52344.67651.6169
H142.68453.08603.46282.03812.71144.01921.00613.82392.91872.55613.00384.19881.6169

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.059 C1 C4 C5 111.114
C1 C4 N7 112.982 C1 C4 H9 106.131
O2 C1 O3 121.975 O2 C1 C4 112.260
O3 C1 C4 125.761 C4 C5 O6 112.548
C4 C5 H10 109.498 C4 C5 H11 107.686
C4 N7 H13 110.922 C4 N7 H14 110.959
C5 C4 N7 110.190 C5 C4 H9 108.076
C5 O6 H12 107.932 O6 C5 H10 111.581
O6 C5 H11 107.551 N7 C4 H9 108.108
H10 C5 H11 107.770 H13 N7 H14 107.093
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.411      
2 O -0.277      
3 O -0.384      
4 C -0.083      
5 C 0.294      
6 O -0.377      
7 N -0.250      
8 H 0.175      
9 H 0.069      
10 H 0.011      
11 H 0.045      
12 H 0.166      
13 H 0.107      
14 H 0.093      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.173 0.593 0.642 3.291
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.215 -1.954 -1.313
y -1.954 -44.188 1.792
z -1.313 1.792 -39.710
Traceless
 xyz
x 0.734 -1.954 -1.313
y -1.954 -3.726 1.792
z -1.313 1.792 2.992
Polar
3z2-r25.983
x2-y22.973
xy-1.954
xz-1.313
yz1.792


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 6.883 0.198 -0.175
y 0.198 6.872 -0.158
z -0.175 -0.158 5.416


<r2> (average value of r2) Å2
<r2> 213.959
(<r2>)1/2 14.627