return to home page Computational Chemistry Comparison and Benchmark DataBase Release 22 (May 2022) Standard Reference Database 101 National Institute of Standards and Technology
You are here: Calculated > Energy > Optimized > Energy

All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HSEh1PBE/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HSEh1PBE/cc-pVDZ
 hartrees
Energy at 0K-398.587396
Energy at 298.15K-398.597566
HF Energy-398.587396
Nuclear repulsion energy326.975753
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HSEh1PBE/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3745 3603 55.04      
2 A 3723 3581 161.71      
3 A 3594 3457 4.25      
4 A 3511 3377 0.96      
5 A 3126 3007 23.55      
6 A 3052 2935 13.08      
7 A 2964 2851 72.30      
8 A 1830 1760 251.83      
9 A 1656 1593 32.16      
10 A 1488 1431 3.06      
11 A 1462 1406 48.71      
12 A 1399 1345 110.45      
13 A 1386 1333 10.48      
14 A 1378 1325 3.28      
15 A 1317 1267 10.96      
16 A 1238 1191 11.17      
17 A 1220 1173 36.01      
18 A 1204 1158 151.82      
19 A 1169 1124 42.31      
20 A 1134 1091 96.98      
21 A 1040 1001 39.29      
22 A 1005 966 0.86      
23 A 906 872 160.74      
24 A 820 789 30.57      
25 A 754 725 36.73      
26 A 660 635 78.72      
27 A 605 582 150.10      
28 A 572 551 11.30      
29 A 549 528 46.48      
30 A 423 407 7.44      
31 A 322 310 4.34      
32 A 307 296 9.14      
33 A 250 240 14.64      
34 A 232 223 21.97      
35 A 169 163 1.53      
36 A 42 40 0.28      

Unscaled Zero Point Vibrational Energy (zpe) 25123.9 cm-1
Scaled (by 0.9619) Zero Point Vibrational Energy (zpe) 24166.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HSEh1PBE/cc-pVDZ
ABC
0.12037 0.08064 0.05081

See section I.F.4 to change rotational constant units
Geometric Data calculated at HSEh1PBE/cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.764 -0.547 -0.003
O2 2.049 -0.357 -0.342
O3 0.367 -1.561 0.524
C4 -0.083 0.679 -0.313
C5 -1.504 0.456 0.192
O6 -2.095 -0.680 -0.374
N7 0.459 1.916 0.220
H8 2.522 -1.168 -0.098
H9 -0.122 0.764 -1.413
H10 -1.482 0.405 1.299
H11 -2.105 1.332 -0.091
H12 -1.612 -1.433 -0.008
H13 1.370 2.111 -0.186
H14 0.590 1.838 1.227

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34151.21001.52292.48802.88632.49211.86622.11932.76603.43102.53592.73232.6894
O21.34152.24222.37053.68334.15602.83030.97012.66713.96754.49083.82962.56413.0670
O31.21002.24222.43382.77122.76433.49172.27703.06512.80873.85452.05293.87253.4787
C41.52292.37052.43381.52442.42881.45163.20081.10342.15222.13612.62502.04412.0419
C52.48803.68332.77121.52441.40062.44614.35072.14031.10841.09911.90273.33822.7143
O62.88634.15602.76432.42881.40063.68974.65042.65652.08672.03200.96604.45354.0147
N72.49212.83033.49171.45162.44613.68973.72412.08092.68572.64773.94381.01711.0186
H81.86620.97012.27703.20084.35074.65043.72413.52834.52335.25894.14293.47633.8109
H92.11932.66713.06511.10342.14032.65652.08093.52833.05512.45033.00292.35492.9377
H102.76603.96752.80872.15221.10842.08672.68574.52333.05511.78262.25973.64042.5207
H113.43104.49083.85452.13611.09912.03202.64775.25892.45031.78262.80953.56313.0428
H122.53593.82962.05292.62501.90270.96603.94384.14293.00292.25972.80954.63504.1323
H132.73232.56413.87252.04413.33824.45351.01713.47632.35493.64043.56314.63501.6371
H142.68943.06703.47872.04192.71434.01471.01863.81092.93772.52073.04284.13231.6371

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.557 C1 C4 C5 109.469
C1 C4 N7 113.797 C1 C4 H9 106.504
O2 C1 O3 122.905 O2 C1 C4 111.544
O3 C1 C4 125.506 C4 C5 O6 112.205
C4 C5 H10 108.639 C4 C5 H11 107.923
C4 N7 H13 110.558 C4 N7 H14 110.267
C5 C4 N7 110.539 C5 C4 H9 108.002
C5 O6 H12 105.552 O6 C5 H10 112.028
O6 C5 H11 108.161 N7 C4 H9 108.292
H10 C5 H11 107.706 H13 N7 H14 107.063
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HSEh1PBE/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.231      
2 O -0.174      
3 O -0.279      
4 C -0.132      
5 C 0.164      
6 O -0.280      
7 N -0.171      
8 H 0.165      
9 H 0.078      
10 H 0.014      
11 H 0.049      
12 H 0.147      
13 H 0.097      
14 H 0.089      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.527 0.401 0.636 3.606
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.285 -2.386 -0.423
y -2.386 -44.104 0.736
z -0.423 0.736 -38.865
Traceless
 xyz
x 0.200 -2.386 -0.423
y -2.386 -4.029 0.736
z -0.423 0.736 3.829
Polar
3z2-r27.658
x2-y22.820
xy-2.386
xz-0.423
yz0.736


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.028 0.149 0.042
y 0.149 7.555 0.037
z 0.042 0.037 5.650


<r2> (average value of r2) Å2
<r2> 214.217
(<r2>)1/2 14.636