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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: CCD/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at CCD/cc-pVDZ
 hartrees
Energy at 0K-397.926034
Energy at 298.15K-397.936222
HF Energy-396.757853
Nuclear repulsion energy325.173874
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at CCD/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3860 3693 74.18      
2 A 3818 3653 82.72      
3 A 3603 3447 2.43      
4 A 3514 3362 0.60      
5 A 3151 3015 24.22      
6 A 3084 2950 14.33      
7 A 3020 2889 56.23      
8 A 1883 1802 248.87      
9 A 1679 1606 29.36      
10 A 1515 1449 3.11      
11 A 1477 1413 42.77      
12 A 1437 1375 70.46      
13 A 1426 1364 25.47      
14 A 1403 1342 4.82      
15 A 1348 1290 9.18      
16 A 1262 1208 31.13      
17 A 1232 1179 63.48      
18 A 1215 1162 142.40      
19 A 1174 1124 12.56      
20 A 1141 1092 93.25      
21 A 1062 1016 42.39      
22 A 1021 977 3.16      
23 A 950 909 153.49      
24 A 834 798 16.37      
25 A 757 724 29.34      
26 A 643 615 98.85      
27 A 583 558 6.90      
28 A 557 533 196.17      
29 A 536 512 10.16      
30 A 441 422 7.14      
31 A 320 306 7.12      
32 A 310 297 14.83      
33 A 262 251 22.76      
34 A 227 217 4.29      
35 A 171 164 2.61      
36 A 38 37 0.71      

Unscaled Zero Point Vibrational Energy (zpe) 25476.1 cm-1
Scaled (by 0.9567) Zero Point Vibrational Energy (zpe) 24373.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at CCD/cc-pVDZ
ABC
0.12008 0.07822 0.05059

See section I.F.4 to change rotational constant units
Geometric Data calculated at CCD/cc-pVDZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.787 -0.544 0.005
O2 2.064 -0.332 -0.367
O3 0.414 -1.560 0.547
C4 -0.092 0.671 -0.309
C5 -1.520 0.436 0.199
O6 -2.122 -0.693 -0.389
N7 0.433 1.925 0.226
H8 2.553 -1.133 -0.127
H9 -0.132 0.757 -1.411
H10 -1.500 0.372 1.308
H11 -2.122 1.318 -0.074
H12 -1.653 -1.454 -0.029
H13 1.346 2.125 -0.181
H14 0.571 1.841 1.234

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34681.21061.53212.51412.93952.50401.86622.13142.78663.45492.60482.73332.6919
O21.34682.25082.37823.70874.20152.84690.96872.66404.00014.50883.89772.56643.0845
O31.21062.25082.44292.80152.83933.50032.28293.08252.82433.88642.14863.87063.4741
C41.53212.37822.44291.53392.44721.46073.20651.10642.16492.14372.65212.04892.0470
C52.51413.70872.80151.53391.40822.45584.37692.15001.11111.10221.90873.34822.7238
O62.93954.20152.83932.44721.40823.70934.70292.66592.09802.03550.96424.47344.0386
N72.50402.84693.50031.46072.45583.70933.73782.08892.70542.64303.97951.01941.0213
H81.86620.96872.28293.20654.37694.70293.73783.52524.55525.27874.21963.47493.8247
H92.13142.66403.08251.10642.15002.66592.08893.52523.06822.46253.01922.36002.9442
H102.78664.00012.82432.16491.11112.09802.70544.55523.06821.78692.26813.65922.5404
H113.45494.50883.88642.14371.10222.03552.64305.27872.46251.78692.81203.56223.0394
H122.60483.89772.14862.65211.90870.96423.97954.21963.01922.26812.81204.67234.1717
H132.73332.56643.87062.04893.34824.47341.01943.47492.36003.65923.56224.67231.6381
H142.69193.08453.47412.04702.72384.03861.02133.82472.94422.54043.03944.17171.6381

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.260 C1 C4 C5 110.165
C1 C4 N7 113.562 C1 C4 H9 106.652
O2 C1 O3 123.224 O2 C1 C4 111.235
O3 C1 C4 125.518 C4 C5 O6 112.490
C4 C5 H10 108.810 C4 C5 H11 107.696
C4 N7 H13 110.129 C4 N7 H14 109.858
C5 C4 N7 110.162 C5 C4 H9 107.943
C5 O6 H12 105.602 O6 C5 H10 112.227
O6 C5 H11 107.731 N7 C4 H9 108.129
H10 C5 H11 107.672 H13 N7 H14 106.779
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability