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All results from a given calculation for C5H12S (1-Pentanethiol)

using model chemistry: PBEPBE/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A'
Energy calculated at PBEPBE/cc-pVTZ
 hartrees
Energy at 0K-595.577652
Energy at 298.15K-595.590305
Nuclear repulsion energy286.212582
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3034 3013 34.58      
2 A' 2981 2960 37.80      
3 A' 2962 2942 42.09      
4 A' 2956 2935 39.62      
5 A' 2949 2929 7.27      
6 A' 2936 2915 6.00      
7 A' 2618 2600 6.18      
8 A' 1461 1451 8.55      
9 A' 1451 1441 0.33      
10 A' 1439 1429 1.22      
11 A' 1434 1424 1.03      
12 A' 1431 1421 0.65      
13 A' 1366 1357 2.73      
14 A' 1347 1338 0.31      
15 A' 1323 1314 7.17      
16 A' 1259 1251 5.55      
17 A' 1196 1187 15.42      
18 A' 1106 1099 3.12      
19 A' 1051 1043 0.22      
20 A' 1038 1030 1.38      
21 A' 1005 998 0.18      
22 A' 886 880 0.85      
23 A' 833 828 0.59      
24 A' 721 716 3.83      
25 A' 424 421 1.14      
26 A' 338 335 0.27      
27 A' 239 237 0.95      
28 A' 114 113 0.94      
29 A" 3032 3011 31.26      
30 A" 3027 3006 43.35      
31 A" 2995 2974 34.84      
32 A" 2980 2959 2.54      
33 A" 2958 2938 1.03      
34 A" 1451 1441 7.42      
35 A" 1289 1280 0.41      
36 A" 1284 1276 0.38      
37 A" 1241 1233 0.23      
38 A" 1179 1171 0.18      
39 A" 1041 1034 1.85      
40 A" 933 927 0.04      
41 A" 816 811 1.50      
42 A" 739 734 0.09      
43 A" 715 710 5.17      
44 A" 246 244 0.01      
45 A" 165 163 9.59      
46 A" 145 144 2.25      
47 A" 95 94 3.43      
48 A" 65 65 1.82      

Unscaled Zero Point Vibrational Energy (zpe) 34145.2 cm-1
Scaled (by 0.9931) Zero Point Vibrational Energy (zpe) 33909.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/cc-pVTZ
ABC
0.47372 0.02653 0.02572

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/cc-pVTZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
S1 -2.400 1.703 0.000
H2 -3.654 1.189 0.000
C3 -1.504 0.093 0.000
H4 -1.796 -0.477 0.892
H5 -1.796 -0.477 -0.892
C6 0.000 0.354 0.000
H7 0.265 0.960 -0.882
H8 0.265 0.960 0.882
C9 0.819 -0.940 0.000
H10 0.548 -1.546 0.882
H11 0.548 -1.546 -0.882
C12 2.331 -0.700 0.000
H13 2.601 -0.093 0.880
H14 2.601 -0.093 -0.880
C15 3.145 -1.995 0.000
H16 2.920 -2.606 0.887
H17 2.920 -2.606 -0.887
H18 4.225 -1.793 0.000

Atom - Atom Distances (Å)
  S1 H2 C3 H4 H5 C6 H7 H8 C9 H10 H11 C12 H13 H14 C15 H16 H17 H18
S11.35571.84242.43192.43192.75302.90362.90364.16514.47494.47495.30645.38615.38616.66446.90286.90287.4906
H21.35572.41382.65102.65103.74864.02374.02374.95455.09115.09116.27686.44596.44597.50767.64247.64248.4247
C31.84242.41381.09861.09861.52622.15802.15802.54242.77032.77033.91624.20234.20235.09585.25715.25716.0311
H42.43192.65101.09861.78472.17063.07572.51202.80162.57603.12764.22834.41364.75625.24475.17365.47116.2270
H52.43192.65101.09861.78472.17062.51203.07572.80163.12762.57604.22834.75624.41365.24475.47115.17366.2270
C62.75303.74861.52622.17062.17061.10261.10261.53162.16542.16542.55862.78222.78223.92504.25104.25104.7391
H72.90364.02372.15803.07572.51201.10261.76482.16683.07782.52222.79373.11032.56264.21924.78464.44534.9029
H82.90364.02372.15802.51203.07571.10261.76482.16682.52223.07782.79372.56263.11034.21924.44534.78464.9029
C94.16514.95452.54242.80162.80161.53162.16682.16681.10401.10401.53092.16022.16022.55342.82362.82363.5108
H104.47495.09112.77032.57603.12762.16543.07782.52221.10401.76312.16212.51563.07122.77892.59773.14263.7894
H114.47495.09112.77033.12762.57602.16542.52223.07781.10401.76312.16213.07122.51562.77893.14262.59773.7894
C125.30646.27683.91624.22834.22832.55862.79372.79371.53092.16212.16211.10281.10281.52892.18272.18272.1863
H135.38616.44594.20234.41364.75622.78223.11032.56262.16022.51563.07121.10281.76062.16482.53263.08832.5102
H145.38616.44594.20234.75624.41362.78222.56263.11032.16023.07122.51561.10281.76062.16483.08832.53262.5102
C156.66447.50765.09585.24475.24473.92504.21924.21922.55342.77892.77891.52892.16482.16481.10031.10031.0989
H166.90287.64245.25715.17365.47114.25104.78464.44532.82362.59773.14262.18272.53263.08831.10031.77411.7751
H176.90287.64245.25715.47115.17364.25104.44534.78462.82363.14262.59772.18273.08832.53261.10031.77411.7751
H187.49068.42476.03116.22706.22704.73914.90294.90293.51083.78943.78942.18632.51022.51021.09891.77511.7751

picture of 1-Pentanethiol state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
S1 C3 H4 108.926 S1 C3 H5 108.926
S1 C3 C6 109.260 H2 S1 C3 96.831
C3 C6 H7 109.299 C3 C6 H8 109.299
C3 C6 C9 112.502 H4 C3 H5 108.642
H4 C3 C6 110.525 H5 C3 C6 110.525
C6 C9 H10 109.426 C6 C9 H11 109.426
C6 C9 C12 113.328 H7 C6 H8 106.320
H7 C6 C9 109.615 H8 C6 C9 109.615
C9 C12 H13 109.138 C9 C12 H14 109.138
C9 C12 C15 113.127 H10 C9 H11 105.975
H10 C9 C12 109.211 H11 C9 C12 109.211
C12 C15 H16 111.185 C12 C15 H17 111.185
C12 C15 H18 111.562 H13 C12 H14 105.927
H13 C12 C15 109.628 H14 C12 C15 109.628
H16 C15 H17 107.446 H16 C15 H18 107.632
H17 C15 H18 107.632
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 S -0.175      
2 H 0.085      
3 C -0.157      
4 H 0.101      
5 H 0.101      
6 C -0.151      
7 H 0.091      
8 H 0.091      
9 C -0.135      
10 H 0.074      
11 H 0.074      
12 C -0.144      
13 H 0.080      
14 H 0.080      
15 C -0.294      
16 H 0.090      
17 H 0.090      
18 H 0.097      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  0.412 -1.615 0.000 1.667
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -45.867 3.394 0.000
y 3.394 -52.016 0.000
z 0.000 0.000 -48.726
Traceless
 xyz
x 4.503 3.394 0.000
y 3.394 -4.719 0.000
z 0.000 0.000 0.216
Polar
3z2-r20.432
x2-y26.148
xy3.394
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.008 -2.369 0.000
y -2.369 12.646 0.000
z 0.000 0.000 9.888


<r2> (average value of r2) Å2
<r2> 413.638
(<r2>)1/2 20.338