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All results from a given calculation for C5H4N4 (purine)

using model chemistry: M06-2X/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at M06-2X/cc-pVTZ
 hartrees
Energy at 0K-411.936565
Energy at 298.15K-411.944538
HF Energy-411.936565
Nuclear repulsion energy414.382992
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at M06-2X/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3673 3509 115.41      
2 A' 3251 3105 0.18      
3 A' 3215 3071 11.84      
4 A' 3193 3050 8.82      
5 A' 1689 1613 78.16      
6 A' 1658 1583 92.79      
7 A' 1559 1489 32.28      
8 A' 1511 1444 1.81      
9 A' 1452 1386 83.10      
10 A' 1425 1361 24.24      
11 A' 1385 1323 57.65      
12 A' 1329 1269 19.96      
13 A' 1306 1247 0.60      
14 A' 1270 1213 48.12      
15 A' 1215 1161 7.61      
16 A' 1154 1102 7.26      
17 A' 1086 1038 16.14      
18 A' 954 911 1.04      
19 A' 918 877 12.59      
20 A' 818 781 15.84      
21 A' 665 635 0.37      
22 A' 573 547 3.71      
23 A' 446 426 12.73      
24 A" 1030 984 0.19      
25 A" 976 932 10.10      
26 A" 921 879 5.47      
27 A" 835 798 10.34      
28 A" 674 644 10.14      
29 A" 632 603 16.08      
30 A" 531 507 93.64      
31 A" 428 409 5.85      
32 A" 253 242 0.67      
33 A" 233 222 5.64      

Unscaled Zero Point Vibrational Energy (zpe) 21128.0 cm-1
Scaled (by 0.9551) Zero Point Vibrational Energy (zpe) 20179.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at M06-2X/cc-pVTZ
ABC
0.13952 0.05901 0.04147

See section I.F.4 to change rotational constant units
Geometric Data calculated at M06-2X/cc-pVTZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.807 -1.249 0.000
C2 -2.096 0.067 0.000
N3 -1.267 1.093 0.000
C4 0.000 0.698 0.000
C5 0.448 -0.622 0.000
C6 -0.537 -1.602 0.000
N7 1.827 -0.683 0.000
C8 2.176 0.567 0.000
N9 1.125 1.459 0.000
H10 -3.150 0.305 0.000
H11 -0.311 -2.661 0.000
H12 3.200 0.898 0.000
H13 1.168 2.463 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34722.40272.65592.33991.31773.67714.37683.99062.05402.05705.44754.7568
C21.34721.31892.18892.63542.28383.99364.30093.50861.08043.26005.36094.0492
N32.40271.31891.32662.42482.79173.56653.48242.41922.04113.87324.47122.7941
C42.65592.18891.32661.39412.36202.28982.17981.35803.17413.37333.20652.1167
C52.33992.63542.42481.39411.38941.38022.09762.18863.71522.17543.14423.1683
C61.31772.28382.79172.36201.38942.53633.47343.48323.23481.08274.49634.4085
N73.67713.99363.56652.28981.38022.53631.29742.25395.07352.91252.09393.2140
C84.37684.30093.48242.17982.09763.47341.29741.37885.33204.07461.07652.1474
N93.99063.50862.41921.35802.18863.48322.25391.37884.42744.36302.15021.0050
H102.05401.08042.04113.17413.71523.23485.07355.33204.42744.10576.37764.8271
H112.05703.26003.87323.37332.17541.08272.91254.07464.36304.10574.99925.3333
H125.44755.36094.47123.20653.14424.49632.09391.07652.15026.37764.99922.5652
H134.75684.04922.79412.11673.16834.40853.21402.14741.00504.82715.33332.5652

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.639 N1 C2 H10 115.143
N1 C6 C5 119.592 N1 C6 H11 117.615
C2 N1 C6 117.957 C2 N3 C4 111.660
N3 C2 H10 116.219 N3 C4 C5 126.037
N3 C4 N9 128.615 C4 C5 C6 116.116
C4 C5 N7 111.251 C4 N9 C8 105.589
C4 N9 H13 126.568 C5 C4 N9 105.348
C5 C6 H11 122.794 C5 N7 C8 103.100
C6 C5 N7 132.633 N7 C8 N9 114.712
N7 C8 H12 123.510 C8 N9 H13 127.844
N9 C8 H12 121.778
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at M06-2X/cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.230      
2 C 0.055      
3 N -0.227      
4 C 0.148      
5 C 0.024      
6 C -0.052      
7 N -0.249      
8 C 0.048      
9 N -0.176      
10 H 0.134      
11 H 0.148      
12 H 0.151      
13 H 0.225      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.179 2.909 0.000 3.635
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.134 6.201 0.000
y 6.201 -47.266 0.000
z 0.000 0.000 -52.071
Traceless
 xyz
x -0.465 6.201 0.000
y 6.201 3.836 0.000
z 0.000 0.000 -3.371
Polar
3z2-r2-6.742
x2-y2-2.868
xy6.201
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.400 1.350 0.000
y 1.350 12.193 0.000
z 0.000 0.000 5.971


<r2> (average value of r2) Å2
<r2> 252.156
(<r2>)1/2 15.879