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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HF/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HF/cc-pVTZ
 hartrees
Energy at 0K-396.883019
Energy at 298.15K-396.893384
HF Energy-396.883019
Nuclear repulsion energy328.438886
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 4152 3778 78.57      
2 A 4098 3730 125.75      
3 A 3818 3475 8.81      
4 A 3729 3394 3.65      
5 A 3252 2959 30.85      
6 A 3206 2917 21.49      
7 A 3154 2870 47.97      
8 A 1978 1800 363.25      
9 A 1797 1635 37.18      
10 A 1633 1486 4.00      
11 A 1561 1420 25.88      
12 A 1542 1404 43.51      
13 A 1508 1372 53.07      
14 A 1500 1365 3.22      
15 A 1432 1303 20.04      
16 A 1351 1229 39.77      
17 A 1292 1176 120.62      
18 A 1272 1157 143.28      
19 A 1217 1108 27.20      
20 A 1196 1088 118.34      
21 A 1117 1017 30.64      
22 A 1071 975 0.81      
23 A 937 853 167.17      
24 A 889 809 52.87      
25 A 819 745 26.83      
26 A 662 603 64.83      
27 A 628 571 65.11      
28 A 557 507 81.23      
29 A 497 453 134.87      
30 A 487 444 6.89      
31 A 318 289 8.21      
32 A 308 280 20.18      
33 A 287 262 19.69      
34 A 220 200 1.14      
35 A 166 151 4.53      
36 A 46 41 1.68      

Unscaled Zero Point Vibrational Energy (zpe) 26846.7 cm-1
Scaled (by 0.9101) Zero Point Vibrational Energy (zpe) 24433.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/cc-pVTZ
ABC
0.11964 0.07789 0.05337

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/cc-pVTZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.825 -0.500 0.030
O2 2.053 -0.287 -0.419
O3 0.535 -1.496 0.605
C4 -0.120 0.649 -0.295
C5 -1.534 0.365 0.199
O6 -2.107 -0.749 -0.409
N7 0.338 1.920 0.226
H8 2.590 -1.035 -0.202
H9 -0.150 0.718 -1.376
H10 -1.529 0.267 1.282
H11 -2.145 1.219 -0.052
H12 -1.671 -1.523 -0.097
H13 1.213 2.187 -0.170
H14 0.447 1.897 1.218

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.32501.18641.52242.51852.97532.47631.85822.10042.77453.43242.70132.72152.7012
O21.32502.19502.36913.69814.18552.86870.94572.60354.00444.47493.93762.62403.1671
O31.18642.19502.41642.81232.92633.44332.25523.04882.79773.87082.31523.82423.4491
C41.52242.36912.41641.52472.43201.44863.19111.08382.14912.11762.67652.03902.0417
C52.51853.69812.81231.52471.39272.43434.37312.12631.08711.07931.91643.31692.7035
O62.97534.18552.92632.43201.39273.67544.70952.62972.05552.00090.94134.43824.0212
N72.47632.86873.44331.44862.43433.67543.73952.06192.70882.59504.00030.99650.9986
H81.85820.94572.25523.19114.37314.70953.73953.45774.56735.24544.29013.50313.8988
H92.10042.60353.04881.08382.12632.62972.06193.45773.02822.44622.99532.33882.9115
H102.77454.00442.79772.14911.08712.05552.70884.56733.02821.75022.26423.64902.5623
H113.43244.47493.87082.11761.07932.00092.59505.24542.44621.75022.78333.49642.9643
H122.70133.93762.31522.67651.91640.94134.00034.29012.99532.26422.78334.69984.2324
H132.72152.62403.82422.03903.31694.43820.99653.50312.33883.64903.49644.69981.6123
H142.70123.16713.44912.04172.70354.02120.99863.89882.91152.56232.96434.23241.6123

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.684 C1 C4 C5 111.486
C1 C4 N7 112.893 C1 C4 H9 106.178
O2 C1 O3 121.758 O2 C1 C4 112.430
O3 C1 C4 125.806 C4 C5 O6 112.872
C4 C5 H10 109.599 C4 C5 H11 107.590
C4 N7 H13 111.664 C4 N7 H14 111.761
C5 C4 N7 109.888 C5 C4 H9 108.012
C5 O6 H12 108.845 O6 C5 H10 111.380
O6 C5 H11 107.401 N7 C4 H9 108.150
H10 C5 H11 107.775 H13 N7 H14 107.819
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.378      
2 O -0.320      
3 O -0.406      
4 C 0.000      
5 C 0.065      
6 O -0.421      
7 N -0.389      
8 H 0.239      
9 H 0.130      
10 H 0.064      
11 H 0.115      
12 H 0.237      
13 H 0.161      
14 H 0.146      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.835 0.739 0.523 2.976
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -40.592 -1.469 -1.781
y -1.469 -43.502 2.123
z -1.781 2.123 -40.944
Traceless
 xyz
x 1.631 -1.469 -1.781
y -1.469 -2.734 2.123
z -1.781 2.123 1.103
Polar
3z2-r22.206
x2-y22.910
xy-1.469
xz-1.781
yz2.123


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 7.563 0.078 -0.230
y 0.078 7.605 -0.224
z -0.230 -0.224 6.215


<r2> (average value of r2) Å2
<r2> 212.835
(<r2>)1/2 14.589