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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B2PLYP=FULL/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B2PLYP=FULL/cc-pVTZ
 hartrees
Energy at 0K-398.857258
Energy at 298.15K-398.867263
HF Energy-398.365388
Nuclear repulsion energy326.405015
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B2PLYP=FULL/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3806 3637 59.54      
2 A 3757 3591 77.74      
3 A 3607 3448 5.37      
4 A 3518 3363 1.98      
5 A 3135 2997 18.31      
6 A 3082 2946 12.77      
7 A 3020 2887 44.14      
8 A 1787 1708 244.48      
9 A 1669 1595 30.37      
10 A 1518 1450 3.73      
11 A 1437 1374 31.41      
12 A 1413 1350 6.35      
13 A 1398 1336 48.97      
14 A 1390 1328 10.07      
15 A 1325 1267 11.89      
16 A 1254 1198 14.12      
17 A 1195 1142 4.02      
18 A 1163 1111 210.95      
19 A 1135 1085 44.75      
20 A 1095 1047 99.83      
21 A 1035 990 39.29      
22 A 1003 959 0.63      
23 A 877 838 162.47      
24 A 821 785 27.71      
25 A 749 716 21.24      
26 A 627 599 85.23      
27 A 590 564 15.72      
28 A 530 506 178.04      
29 A 509 486 15.21      
30 A 453 433 8.30      
31 A 294 281 4.99      
32 A 285 273 17.38      
33 A 267 255 20.70      
34 A 209 200 2.64      
35 A 156 150 4.36      
36 A 37 35 1.24      

Unscaled Zero Point Vibrational Energy (zpe) 25071.3 cm-1
Scaled (by 0.9558) Zero Point Vibrational Energy (zpe) 23963.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B2PLYP=FULL/cc-pVTZ
ABC
0.11803 0.07818 0.05272

See section I.F.4 to change rotational constant units
Geometric Data calculated at B2PLYP=FULL/cc-pVTZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.787 -0.532 0.013
O2 2.057 -0.335 -0.385
O3 0.426 -1.540 0.573
C4 -0.093 0.670 -0.307
C5 -1.514 0.425 0.189
O6 -2.104 -0.711 -0.395
N7 0.412 1.926 0.230
H8 2.558 -1.126 -0.150
H9 -0.128 0.752 -1.393
H10 -1.500 0.360 1.282
H11 -2.113 1.288 -0.085
H12 -1.642 -1.478 -0.046
H13 1.309 2.159 -0.168
H14 0.526 1.871 1.232

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34471.20841.52422.49862.92552.49591.87472.11312.76413.42572.60752.74712.7077
O21.34472.24292.37443.69524.17762.86240.96602.64013.98914.48433.88602.61213.1346
O31.20842.24292.43472.78772.83303.48282.28923.07042.79713.85712.15953.87443.4757
C41.52422.37442.43471.52432.44031.45623.20631.09012.14462.12372.66032.05042.0486
C52.49863.69522.78771.52431.40692.44134.37052.12881.09451.08581.92153.33202.7089
O62.92554.17762.83302.44031.40693.69704.68702.65322.07902.02240.96114.46484.0284
N72.49592.86243.48281.45622.44133.69703.75032.07462.68562.62283.98441.00901.0107
H81.87470.96602.28923.20634.37054.68703.75033.50564.55305.25844.21603.51433.8761
H92.11312.64013.07041.09012.12882.65322.07463.50563.03202.43713.01292.35542.9284
H102.76413.98912.79712.14461.09452.07902.68564.55303.03201.76182.27183.63722.5277
H113.42574.48433.85712.12371.08582.02242.62285.25842.43711.76182.80573.53233.0063
H122.60753.88602.15952.66031.92150.96113.98444.21603.01292.27182.80574.68484.1889
H132.74712.61213.87442.05043.33204.46481.00903.51432.35543.63723.53234.68481.6302
H142.70773.13463.47572.04862.70894.02841.01073.87612.92842.52773.00634.18891.6302

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.308 C1 C4 C5 110.095
C1 C4 N7 113.724 C1 C4 H9 106.681
O2 C1 O3 122.829 O2 C1 C4 111.558
O3 C1 C4 125.602 C4 C5 O6 112.658
C4 C5 H10 108.852 C4 C5 H11 107.727
C4 N7 H13 111.259 C4 N7 H14 110.989
C5 C4 N7 109.970 C5 C4 H9 107.879
C5 O6 H12 106.969 O6 C5 H10 111.829
O6 C5 H11 107.758 N7 C4 H9 108.265
H10 C5 H11 107.817 H13 N7 H14 107.635
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability