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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: wB97X-D/cc-pVTZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at wB97X-D/cc-pVTZ
 hartrees
Energy at 0K-398.993063
Energy at 298.15K-399.003127
HF Energy-398.993063
Nuclear repulsion energy326.663317
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at wB97X-D/cc-pVTZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3851 3682 66.74      
2 A 3822 3654 83.00      
3 A 3632 3472 6.06      
4 A 3542 3386 1.89      
5 A 3126 2989 19.05      
6 A 3072 2937 13.26      
7 A 3005 2872 50.02      
8 A 1833 1752 279.95      
9 A 1672 1598 34.05      
10 A 1511 1445 4.17      
11 A 1440 1377 33.69      
12 A 1408 1346 14.10      
13 A 1399 1338 70.84      
14 A 1386 1325 7.84      
15 A 1327 1269 9.92      
16 A 1251 1196 13.71      
17 A 1207 1154 16.07      
18 A 1184 1132 204.39      
19 A 1151 1100 24.52      
20 A 1121 1071 117.47      
21 A 1039 993 32.55      
22 A 1007 963 0.27      
23 A 870 832 151.12      
24 A 823 787 49.32      
25 A 753 720 24.16      
26 A 631 603 91.86      
27 A 585 560 9.32      
28 A 537 514 178.44      
29 A 517 495 20.05      
30 A 448 428 7.91      
31 A 306 293 5.83      
32 A 295 282 9.52      
33 A 264 253 27.87      
34 A 220 210 4.01      
35 A 163 156 3.98      
36 A 33 32 0.92      

Unscaled Zero Point Vibrational Energy (zpe) 25215.0 cm-1
Scaled (by 0.956) Zero Point Vibrational Energy (zpe) 24105.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at wB97X-D/cc-pVTZ
ABC
0.11995 0.07839 0.05176

See section I.F.4 to change rotational constant units
Geometric Data calculated at wB97X-D/cc-pVTZ

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.797 -0.528 0.010
O2 2.060 -0.317 -0.384
O3 0.454 -1.537 0.569
C4 -0.101 0.665 -0.306
C5 -1.520 0.410 0.196
O6 -2.112 -0.715 -0.395
N7 0.396 1.923 0.228
H8 2.572 -1.098 -0.148
H9 -0.141 0.748 -1.394
H10 -1.503 0.333 1.290
H11 -2.123 1.277 -0.066
H12 -1.652 -1.487 -0.058
H13 1.287 2.169 -0.176
H14 0.513 1.872 1.231

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.33941.20391.52612.50652.94282.49291.87082.11642.76933.43392.63072.74712.7077
O21.33942.23052.37483.69864.19042.85670.96312.64553.98964.48773.90502.61143.1295
O31.20392.23052.43382.79782.86133.47752.27873.07102.80113.86862.19773.87103.4738
C41.52612.37482.43381.52652.44051.45393.20581.09242.15012.12632.66382.05082.0483
C52.50653.69862.79781.52651.40202.44124.37442.13191.09711.08831.91813.33362.7094
O62.94284.19042.86132.44051.40203.69254.70552.65032.07562.01920.95914.46314.0281
N72.49292.85673.47751.45392.44123.69253.74222.07362.69482.61713.98731.00931.0110
H81.87080.96312.27873.20584.37444.70553.74223.50984.55185.26234.24233.51053.8686
H92.11642.64553.07101.09242.13192.65032.07363.50983.03882.44403.01032.35442.9296
H102.76933.98962.80112.15011.09712.07562.69484.55183.03881.76562.26923.64782.5371
H113.43394.48773.86862.12631.08832.01922.61715.26232.44401.76562.80353.52702.9976
H122.63073.90502.19772.66381.91810.95913.98734.24233.01032.26922.80354.69194.1986
H132.74712.61143.87102.05083.33364.46311.00933.51052.35443.64783.52704.69191.6330
H142.70773.12953.47382.04832.70944.02811.01103.86862.92962.53712.99764.19861.6330

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.561 C1 C4 C5 110.391
C1 C4 N7 113.529 C1 C4 H9 106.679
O2 C1 O3 122.486 O2 C1 C4 111.779
O3 C1 C4 125.717 C4 C5 O6 112.824
C4 C5 H10 108.976 C4 C5 H11 107.636
C4 N7 H13 111.456 C4 N7 H14 111.126
C5 C4 N7 109.966 C5 C4 H9 107.837
C5 O6 H12 107.165 O6 C5 H10 111.731
O6 C5 H11 107.685 N7 C4 H9 108.211
H10 C5 H11 107.778 H13 N7 H14 107.866
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at wB97X-D/cc-pVTZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.279      
2 O -0.244      
3 O -0.332      
4 C -0.040      
5 C 0.028      
6 O -0.354      
7 N -0.310      
8 H 0.213      
9 H 0.123      
10 H 0.061      
11 H 0.098      
12 H 0.212      
13 H 0.140      
14 H 0.124      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.120 0.564 0.592 3.225
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -40.939 -1.939 -1.279
y -1.939 -43.787 1.729
z -1.279 1.729 -40.031
Traceless
 xyz
x 0.970 -1.939 -1.279
y -1.939 -3.302 1.729
z -1.279 1.729 2.332
Polar
3z2-r24.664
x2-y22.848
xy-1.939
xz-1.279
yz1.729


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.580 0.099 -0.202
y 0.099 8.387 -0.164
z -0.202 -0.164 6.521


<r2> (average value of r2) Å2
<r2> 214.751
(<r2>)1/2 14.654