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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HF/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HF/6-311G*
 hartrees
Energy at 0K-409.552610
Energy at 298.15K-409.560943
HF Energy-409.552610
Nuclear repulsion energy417.049784
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3930 3555 105.57      
2 A' 3419 3092 5.73      
3 A' 3378 3055 28.08      
4 A' 3363 3042 22.33      
5 A' 1828 1653 122.89      
6 A' 1795 1624 168.39      
7 A' 1712 1548 43.92      
8 A' 1623 1468 11.22      
9 A' 1562 1413 31.75      
10 A' 1553 1405 108.43      
11 A' 1490 1347 77.20      
12 A' 1424 1288 28.31      
13 A' 1403 1269 6.67      
14 A' 1308 1183 5.89      
15 A' 1260 1139 44.90      
16 A' 1223 1106 11.93      
17 A' 1162 1051 30.27      
18 A' 1022 924 1.16      
19 A' 988 894 18.63      
20 A' 869 786 21.92      
21 A' 713 645 0.07      
22 A' 615 556 3.17      
23 A' 480 434 13.41      
24 A" 1129 1021 0.40      
25 A" 1068 966 5.30      
26 A" 1021 923 3.12      
27 A" 902 816 17.52      
28 A" 721 652 16.96      
29 A" 672 608 21.34      
30 A" 559 505 126.87      
31 A" 464 420 17.39      
32 A" 277 251 0.06      
33 A" 254 229 7.68      

Unscaled Zero Point Vibrational Energy (zpe) 22592.6 cm-1
Scaled (by 0.9044) Zero Point Vibrational Energy (zpe) 20432.7 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/6-311G*
ABC
0.14197 0.05953 0.04194

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/6-311G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.803 -1.242 0.000
C2 -2.095 0.067 0.000
N3 -1.267 1.083 0.000
C4 0.000 0.695 0.000
C5 0.444 -0.617 0.000
C6 -0.540 -1.595 0.000
N7 1.825 -0.672 0.000
C8 2.178 0.563 0.000
N9 1.126 1.453 0.000
H10 -3.144 0.304 0.000
H11 -0.321 -2.650 0.000
H12 3.201 0.885 0.000
H13 1.171 2.442 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34102.38612.64612.33211.31193.67284.37163.98032.04632.04495.43784.7351
C21.34101.31102.18702.62932.27633.98924.30213.50661.07523.24515.35914.0388
N32.38611.31101.32492.41182.77523.55533.48422.42132.03223.85114.47222.7914
C42.64612.18701.32491.38502.35272.28022.18241.35763.16783.35993.20682.1039
C52.33212.62932.41181.38501.38701.38252.09812.17973.70392.17153.14043.1449
C61.31192.27632.77522.35271.38702.53873.47083.47363.22311.07734.48884.3852
N73.67283.98923.55532.28021.38252.53871.28462.23705.06382.91802.07853.1823
C84.37164.30213.48422.18242.09813.47081.28461.37815.32844.07021.07242.1321
N93.98033.50662.42131.35762.17973.47362.23701.37814.42164.35032.15110.9905
H102.04631.07522.03223.16783.70393.22315.06385.32844.42164.08646.37144.8157
H112.04493.24513.85113.35992.17151.07732.91804.07024.35034.08644.99015.3062
H125.43785.35914.47223.20683.14044.48882.07851.07242.15116.37144.99012.5579
H134.73514.03882.79142.10393.14494.38523.18232.13210.99054.81575.30622.5579

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.248 N1 C2 H10 115.319
N1 C6 C5 119.539 N1 C6 H11 117.379
C2 N1 C6 118.193 C2 N3 C4 112.137
N3 C2 H10 116.434 N3 C4 C5 125.733
N3 C4 N9 129.003 C4 C5 C6 116.151
C4 C5 N7 110.960 C4 N9 C8 105.828
C4 N9 H13 126.568 C5 C4 N9 105.264
C5 C6 H11 123.082 C5 N7 C8 103.689
C6 C5 N7 132.889 N7 C8 N9 114.259
N7 C8 H12 123.476 C8 N9 H13 127.604
N9 C8 H12 122.265
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.420      
2 C 0.111      
3 N -0.451      
4 C 0.587      
5 C -0.040      
6 C 0.071      
7 N -0.428      
8 C 0.165      
9 N -0.716      
10 H 0.227      
11 H 0.249      
12 H 0.246      
13 H 0.398      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.256 2.934 0.000 3.701
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.226 6.428 0.000
y 6.428 -47.538 0.000
z 0.000 0.000 -52.418
Traceless
 xyz
x -0.248 6.428 0.000
y 6.428 3.784 0.000
z 0.000 0.000 -3.536
Polar
3z2-r2-7.072
x2-y2-2.688
xy6.428
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.441 1.346 0.000
y 1.346 11.005 0.000
z 0.000 0.000 4.879


<r2> (average value of r2) Å2
<r2> 249.783
(<r2>)1/2 15.805