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All results from a given calculation for C5H4N4 (purine)

using model chemistry: BLYP/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at BLYP/6-311G*
 hartrees
Energy at 0K-411.922555
Energy at 298.15K-411.930179
HF Energy-411.922555
Nuclear repulsion energy408.951840
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3533 3524 43.46      
2 A' 3157 3149 3.03      
3 A' 3094 3087 24.18      
4 A' 3076 3069 24.12      
5 A' 1573 1569 56.10      
6 A' 1537 1533 59.45      
7 A' 1448 1445 21.00      
8 A' 1425 1422 2.82      
9 A' 1372 1369 23.37      
10 A' 1367 1363 30.91      
11 A' 1311 1307 38.32      
12 A' 1261 1258 51.45      
13 A' 1236 1233 3.18      
14 A' 1223 1220 46.94      
15 A' 1159 1156 6.89      
16 A' 1084 1082 5.48      
17 A' 1034 1031 17.83      
18 A' 914 912 1.34      
19 A' 880 878 12.41      
20 A' 777 775 11.45      
21 A' 640 638 0.43      
22 A' 553 551 3.06      
23 A' 430 429 11.80      
24 A" 945 942 0.48      
25 A" 895 893 12.18      
26 A" 820 818 4.68      
27 A" 784 782 13.69      
28 A" 644 643 3.45      
29 A" 605 603 27.45      
30 A" 517 516 95.04      
31 A" 401 400 3.54      
32 A" 235 234 0.47      
33 A" 222 222 4.44      

Unscaled Zero Point Vibrational Energy (zpe) 20075.4 cm-1
Scaled (by 0.9975) Zero Point Vibrational Energy (zpe) 20025.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/6-311G*
ABC
0.13559 0.05756 0.04041

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/6-311G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.834 -1.266 0.000
C2 -2.124 0.068 0.000
N3 -1.282 1.110 0.000
C4 0.000 0.711 0.000
C5 0.456 -0.632 0.000
C6 -0.545 -1.621 0.000
N7 1.850 -0.698 0.000
C8 2.206 0.573 0.000
N9 1.141 1.481 0.000
H10 -3.187 0.309 0.000
H11 -0.316 -2.690 0.000
H12 3.239 0.906 0.000
H13 1.183 2.495 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36522.43972.69652.37561.33673.72704.43874.04922.07672.08125.51864.8211
C21.36521.33952.21872.67262.31174.04634.35903.55731.09043.29755.42794.1011
N32.43971.33951.34302.46122.82903.61643.52962.45162.06643.92114.52612.8269
C42.69652.21871.34301.41842.39462.32502.21051.37663.21223.41523.24512.1403
C52.37562.67262.46121.41841.40671.39552.12512.22153.76242.19733.18053.2106
C61.33672.31172.82902.39461.40672.56643.51863.53043.27191.09324.55064.4636
N73.72704.04633.61642.32501.39552.56641.31962.29095.13632.94212.12243.2617
C84.43874.35903.52962.21052.12513.51861.31961.39955.39964.12351.08562.1779
N94.04923.55732.45161.37662.22153.53042.29091.39954.48404.41762.17521.0150
H102.07671.09042.06643.21223.76243.27195.13635.39964.48404.15196.45394.8856
H112.08123.29753.92113.41522.19731.09322.94214.12354.41764.15195.05665.3968
H125.51865.42794.52613.24513.18054.55062.12241.08562.17526.45395.05662.5988
H134.82114.10112.82692.14033.21064.46363.26172.17791.01504.88565.39682.5988

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.838 N1 C2 H10 115.033
N1 C6 C5 119.960 N1 C6 H11 117.503
C2 N1 C6 117.645 C2 N3 C4 111.602
N3 C2 H10 116.129 N3 C4 C5 126.045
N3 C4 N9 128.693 C4 C5 C6 115.911
C4 C5 N7 111.431 C4 N9 C8 105.544
C4 N9 H13 126.325 C5 C4 N9 105.263
C5 C6 H11 122.537 C5 N7 C8 102.982
C6 C5 N7 132.658 N7 C8 N9 114.780
N7 C8 H12 123.577 C8 N9 H13 128.131
N9 C8 H12 121.643
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.252      
2 C -0.018      
3 N -0.258      
4 C 0.365      
5 C -0.045      
6 C -0.024      
7 N -0.272      
8 C 0.072      
9 N -0.523      
10 H 0.196      
11 H 0.207      
12 H 0.211      
13 H 0.343      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.205 2.968 0.000 3.698
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.700 6.110 0.000
y 6.110 -47.649 0.000
z 0.000 0.000 -52.060
Traceless
 xyz
x -0.846 6.110 0.000
y 6.110 3.731 0.000
z 0.000 0.000 -2.885
Polar
3z2-r2-5.771
x2-y2-3.051
xy6.110
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.884 1.491 0.000
y 1.491 12.239 0.000
z 0.000 0.000 5.075


<r2> (average value of r2) Å2
<r2> 258.093
(<r2>)1/2 16.065