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All results from a given calculation for C5H4N4 (purine)

using model chemistry: M06-2X/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at M06-2X/6-311G*
 hartrees
Energy at 0K-411.883232
Energy at 298.15K-411.891182
HF Energy-411.883232
Nuclear repulsion energy413.790665
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at M06-2X/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A' 3696 3696 99.96      
2 A' 3266 3266 0.57      
3 A' 3231 3231 15.53      
4 A' 3206 3206 10.77      
5 A' 1699 1699 76.89      
6 A' 1663 1663 93.09      
7 A' 1567 1567 33.44      
8 A' 1517 1517 2.29      
9 A' 1457 1457 79.78      
10 A' 1439 1439 30.85      
11 A' 1390 1390 62.52      
12 A' 1332 1332 17.00      
13 A' 1313 1313 0.32      
14 A' 1276 1276 50.23      
15 A' 1220 1220 6.69      
16 A' 1155 1155 7.27      
17 A' 1094 1094 17.63      
18 A' 957 957 1.05      
19 A' 923 923 12.33      
20 A' 819 819 14.89      
21 A' 667 667 0.26      
22 A' 574 574 3.67      
23 A' 446 446 13.52      
24 A" 1022 1022 0.23      
25 A" 967 967 12.21      
26 A" 905 905 5.94      
27 A" 830 830 11.61      
28 A" 673 673 7.70      
29 A" 632 632 23.21      
30 A" 547 547 114.00      
31 A" 428 428 5.56      
32 A" 254 254 0.47      
33 A" 232 232 6.07      

Unscaled Zero Point Vibrational Energy (zpe) 21199.0 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 21199.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at M06-2X/6-311G*
ABC
0.13904 0.05886 0.04135

See section I.F.4 to change rotational constant units
Geometric Data calculated at M06-2X/6-311G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.811 -1.249 0.000
C2 -2.097 0.069 0.000
N3 -1.267 1.097 0.000
C4 0.000 0.700 0.000
C5 0.450 -0.623 0.000
C6 -0.540 -1.603 0.000
N7 1.829 -0.687 0.000
C8 2.178 0.564 0.000
N9 1.127 1.460 0.000
H10 -3.152 0.309 0.000
H11 -0.315 -2.664 0.000
H12 3.204 0.894 0.000
H13 1.170 2.466 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34882.40752.66042.34561.31923.68294.38113.99572.05592.05915.45374.7623
C21.34881.32062.19002.63932.28503.99834.30353.51101.08213.26295.36534.0515
N32.40751.32061.32782.43002.79573.57323.48622.42152.04293.87924.47632.7952
C42.66042.19001.32781.39752.36562.29562.18221.35893.17653.37903.21022.1176
C52.34562.63932.43001.39751.39291.38072.09622.18983.72072.17973.14453.1711
C61.31922.28502.79572.36561.39292.53993.47573.48683.23731.08464.50044.4130
N73.68293.99833.57322.29561.38072.53991.29832.25855.08002.91642.09533.2205
C84.38114.30353.48622.18222.09623.47571.29831.38125.33634.07821.07832.1525
N93.99573.51102.42151.35892.18983.48682.25851.38124.43124.36842.15321.0066
H102.05591.08212.04293.17653.72073.23735.08005.33634.43124.10966.38364.8302
H112.05913.26293.87923.37902.17971.08462.91644.07824.36844.10965.00445.3399
H125.45375.36534.47633.21023.14454.50042.09531.07832.15326.38365.00442.5709
H134.76234.05152.79522.11763.17114.41303.22052.15251.00664.83025.33992.5709

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.810 N1 C2 H10 115.057
N1 C6 C5 119.710 N1 C6 H11 117.539
C2 N1 C6 117.828 C2 N3 C4 111.568
N3 C2 H10 116.133 N3 C4 C5 126.139
N3 C4 N9 128.660 C4 C5 C6 115.944
C4 C5 N7 111.436 C4 N9 C8 105.574
C4 N9 H13 126.423 C5 C4 N9 105.201
C5 C6 H11 122.751 C5 N7 C8 102.928
C6 C5 N7 132.619 N7 C8 N9 114.862
N7 C8 H12 123.422 C8 N9 H13 128.004
N9 C8 H12 121.716
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at M06-2X/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.348      
2 C 0.033      
3 N -0.348      
4 C 0.467      
5 C -0.070      
6 C 0.031      
7 N -0.354      
8 C 0.120      
9 N -0.650      
10 H 0.233      
11 H 0.252      
12 H 0.251      
13 H 0.385      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.202 2.980 0.000 3.706
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.987 6.256 0.000
y 6.256 -47.098 0.000
z 0.000 0.000 -52.290
Traceless
 xyz
x -0.294 6.256 0.000
y 6.256 4.041 0.000
z 0.000 0.000 -3.747
Polar
3z2-r2-7.494
x2-y2-2.890
xy6.256
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.613 1.327 0.000
y 1.327 11.514 0.000
z 0.000 0.000 4.986


<r2> (average value of r2) Å2
<r2> 252.748
(<r2>)1/2 15.898