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All results from a given calculation for C5H4N4 (purine)

using model chemistry: PBEPBE/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at PBEPBE/6-311G*
 hartrees
Energy at 0K-411.565113
Energy at 298.15K-411.572781
HF Energy-411.565113
Nuclear repulsion energy410.507851
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at PBEPBE/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3562 3525 50.53      
2 A' 3169 3136 2.08      
3 A' 3105 3073 21.62      
4 A' 3087 3055 21.47      
5 A' 1604 1588 55.91      
6 A' 1567 1550 63.87      
7 A' 1473 1458 22.96      
8 A' 1440 1425 1.70      
9 A' 1391 1377 33.51      
10 A' 1380 1366 28.58      
11 A' 1328 1314 60.18      
12 A' 1285 1272 23.14      
13 A' 1272 1259 20.81      
14 A' 1246 1233 25.92      
15 A' 1170 1157 6.68      
16 A' 1103 1092 6.28      
17 A' 1055 1045 14.87      
18 A' 918 909 1.30      
19 A' 885 876 11.74      
20 A' 785 777 11.83      
21 A' 641 634 0.41      
22 A' 553 547 3.59      
23 A' 431 427 12.29      
24 A" 946 936 0.35      
25 A" 897 888 12.87      
26 A" 825 816 4.81      
27 A" 788 779 13.91      
28 A" 648 641 2.02      
29 A" 608 602 33.33      
30 A" 537 531 91.72      
31 A" 398 394 2.43      
32 A" 233 231 0.30      
33 A" 223 220 4.97      

Unscaled Zero Point Vibrational Energy (zpe) 20276.5 cm-1
Scaled (by 0.9896) Zero Point Vibrational Energy (zpe) 20065.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at PBEPBE/6-311G*
ABC
0.13641 0.05809 0.04074

See section I.F.4 to change rotational constant units
Geometric Data calculated at PBEPBE/6-311G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.826 -1.261 0.000
C2 -2.112 0.068 0.000
N3 -1.276 1.109 0.000
C4 0.000 0.708 0.000
C5 0.455 -0.630 0.000
C6 -0.542 -1.616 0.000
N7 1.842 -0.696 0.000
C8 2.194 0.571 0.000
N9 1.134 1.475 0.000
H10 -3.177 0.309 0.000
H11 -0.314 -2.687 0.000
H12 3.228 0.906 0.000
H13 1.175 2.488 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.35972.43282.68562.36671.33193.71104.41744.03072.07192.07795.49894.8024
C21.35971.33492.20712.66082.30274.02734.33513.53811.09193.28985.40554.0820
N32.43281.33491.33742.45392.82213.60273.51102.43802.06223.91564.50862.8126
C42.68562.20711.33741.41392.38702.31622.19781.36883.20213.40983.23402.1328
C52.36672.66082.45391.41391.40251.38822.11322.21173.75202.19593.16993.2006
C61.33192.30272.82212.38701.40252.55553.50293.51623.26371.09464.53614.4493
N73.71104.02733.60272.31621.38822.55551.31542.28315.11882.93472.11853.2535
C84.41744.33513.51102.19782.11323.50291.31541.39205.37704.11171.08722.1707
N94.03073.53812.43801.36882.21173.51622.28311.39204.46604.40642.16951.0145
H102.07191.09192.06223.20213.75203.26375.11885.37704.46604.14426.43284.8670
H112.07793.28983.91563.40982.19591.09462.93474.11174.40644.14425.04565.3852
H125.49895.40554.50863.23403.16994.53612.11851.08722.16956.43285.04562.5919
H134.80244.08202.81262.13283.20064.44933.25352.17071.01454.86705.38522.5919

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.060 N1 C2 H10 114.936
N1 C6 C5 119.865 N1 C6 H11 117.479
C2 N1 C6 117.624 C2 N3 C4 111.362
N3 C2 H10 116.004 N3 C4 C5 126.201
N3 C4 N9 128.541 C4 C5 C6 115.888
C4 C5 N7 111.498 C4 N9 C8 105.509
C4 N9 H13 126.337 C5 C4 N9 105.258
C5 C6 H11 122.656 C5 N7 C8 102.790
C6 C5 N7 132.614 N7 C8 N9 114.946
N7 C8 H12 123.436 C8 N9 H13 128.154
N9 C8 H12 121.619
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at PBEPBE/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.278      
2 C -0.013      
3 N -0.290      
4 C 0.425      
5 C -0.064      
6 C 0.002      
7 N -0.303      
8 C 0.084      
9 N -0.566      
10 H 0.207      
11 H 0.218      
12 H 0.223      
13 H 0.354      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.217 3.012 0.000 3.740
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.208 6.160 0.000
y 6.160 -47.086 0.000
z 0.000 0.000 -51.961
Traceless
 xyz
x -0.684 6.160 0.000
y 6.160 3.998 0.000
z 0.000 0.000 -3.314
Polar
3z2-r2-6.628
x2-y2-3.122
xy6.160
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.750 1.452 0.000
y 1.452 12.144 0.000
z 0.000 0.000 5.092


<r2> (average value of r2) Å2
<r2> 256.065
(<r2>)1/2 16.002