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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: BLYP/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at BLYP/6-311G*
 hartrees
Energy at 0K-398.949084
Energy at 298.15K-398.958893
HF Energy-398.949084
Nuclear repulsion energy321.950562
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3579 3570 32.38      
2 A 3553 3544 21.99      
3 A 3453 3444 0.09      
4 A 3371 3363 1.69      
5 A 3038 3030 26.73      
6 A 2969 2962 18.38      
7 A 2891 2884 68.54      
8 A 1707 1702 240.97      
9 A 1673 1669 30.80      
10 A 1475 1471 1.70      
11 A 1411 1407 62.51      
12 A 1363 1360 5.78      
13 A 1361 1357 2.86      
14 A 1324 1321 16.99      
15 A 1288 1285 3.89      
16 A 1217 1214 13.84      
17 A 1157 1154 4.67      
18 A 1115 1112 155.33      
19 A 1079 1077 137.89      
20 A 1022 1019 97.16      
21 A 993 990 17.47      
22 A 959 956 5.63      
23 A 859 857 185.60      
24 A 786 784 20.50      
25 A 710 708 30.77      
26 A 632 631 89.42      
27 A 557 556 130.68      
28 A 554 553 84.40      
29 A 496 495 23.08      
30 A 424 423 8.53      
31 A 290 290 4.43      
32 A 281 280 18.08      
33 A 261 261 25.21      
34 A 210 210 4.06      
35 A 159 159 3.16      
36 A 27 26 0.95      

Unscaled Zero Point Vibrational Energy (zpe) 24120.9 cm-1
Scaled (by 0.9975) Zero Point Vibrational Energy (zpe) 24060.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/6-311G*
ABC
0.11587 0.07664 0.05034

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/6-311G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.799 -0.547 0.005
O2 2.088 -0.335 -0.374
O3 0.437 -1.571 0.559
C4 -0.094 0.678 -0.306
C5 -1.539 0.433 0.191
O6 -2.143 -0.714 -0.389
N7 0.424 1.950 0.229
H8 2.606 -1.130 -0.140
H9 -0.134 0.766 -1.404
H10 -1.533 0.377 1.297
H11 -2.142 1.304 -0.093
H12 -1.693 -1.493 -0.020
H13 1.325 2.191 -0.183
H14 0.548 1.904 1.242

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.35971.21971.54722.54182.97382.53501.90412.13962.82223.47662.66632.79402.7563
O21.35972.26362.40623.74984.24842.89040.97742.68514.05124.54513.97042.64543.1609
O31.21972.26362.46742.83822.87993.53662.32133.10482.86723.91692.20933.93583.5425
C41.54722.40622.46741.54752.47911.47433.25351.10162.17562.15262.71162.07792.0765
C52.54183.74982.83821.54751.42102.48084.44212.15081.10731.09681.94393.38092.7608
O62.97384.24842.87992.47911.42103.75134.77432.69362.09932.04000.97234.52914.0939
N72.53502.89043.53661.47432.48083.75133.79302.09292.72872.66544.04971.01981.0217
H81.90410.97742.32133.25354.44214.77433.79303.56364.63385.33594.31643.55973.9175
H92.13962.68513.10481.10162.15082.69362.09293.56363.06622.45773.07342.37712.9597
H102.82224.05122.86722.17561.10732.09932.72874.63383.06621.77772.29303.69472.5819
H113.47664.54513.91692.15261.09682.04002.66545.33592.45771.77772.83373.57993.0624
H122.66633.97042.20932.71161.94390.97234.04974.31643.07342.29302.83374.76534.2608
H132.79402.64543.93582.07793.38094.52911.01983.55972.37713.69473.57994.76531.6482
H142.75633.16093.54252.07652.76084.09391.02173.91752.95972.58193.06244.26081.6482

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.006 C1 C4 C5 110.439
C1 C4 N7 114.046 C1 C4 H9 106.536
O2 C1 O3 122.611 O2 C1 C4 111.575
O3 C1 C4 125.771 C4 C5 O6 113.190
C4 C5 H10 108.935 C4 C5 H11 107.763
C4 N7 H13 111.547 C4 N7 H14 111.300
C5 C4 N7 110.337 C5 C4 H9 107.361
C5 O6 H12 107.132 O6 C5 H10 111.663
O6 C5 H11 107.539 N7 C4 H9 107.803
H10 C5 H11 107.515 H13 N7 H14 107.680
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.380      
2 O -0.468      
3 O -0.317      
4 C -0.182      
5 C -0.176      
6 O -0.523      
7 N -0.680      
8 H 0.376      
9 H 0.227      
10 H 0.165      
11 H 0.213      
12 H 0.372      
13 H 0.315      
14 H 0.298      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.299 0.307 0.743 3.395
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -42.063 -2.023 -1.145
y -2.023 -44.386 1.448
z -1.145 1.448 -40.720
Traceless
 xyz
x 0.490 -2.023 -1.145
y -2.023 -2.995 1.448
z -1.145 1.448 2.505
Polar
3z2-r25.009
x2-y22.323
xy-2.023
xz-1.145
yz1.448


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.746 0.040 -0.262
y 0.040 8.427 -0.169
z -0.262 -0.169 6.201


<r2> (average value of r2) Å2
<r2> 220.488
(<r2>)1/2 14.849