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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP2=FULL/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP2=FULL/6-311G*
 hartrees
Energy at 0K-398.103101
Energy at 298.15K-398.113242
HF Energy-396.809258
Nuclear repulsion energy326.404669
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2=FULL/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3833 3630 45.70      
2 A 3767 3568 62.21      
3 A 3651 3458 4.51      
4 A 3552 3364 1.22      
5 A 3187 3018 18.18      
6 A 3118 2953 10.52      
7 A 3054 2893 47.55      
8 A 1815 1719 222.67      
9 A 1742 1649 44.34      
10 A 1543 1462 3.53      
11 A 1465 1387 38.68      
12 A 1438 1362 6.09      
13 A 1428 1352 49.03      
14 A 1413 1338 22.88      
15 A 1347 1276 6.68      
16 A 1277 1209 17.53      
17 A 1222 1157 23.20      
18 A 1196 1133 225.38      
19 A 1174 1112 25.75      
20 A 1125 1065 93.57      
21 A 1064 1008 46.69      
22 A 1023 969 1.98      
23 A 933 883 206.03      
24 A 836 792 18.58      
25 A 760 720 30.40      
26 A 652 618 113.52      
27 A 597 565 9.56      
28 A 546 517 246.97      
29 A 522 495 13.39      
30 A 457 432 6.79      
31 A 305 289 7.51      
32 A 293 278 22.03      
33 A 271 256 26.52      
34 A 220 208 1.74      
35 A 178 168 4.00      
36 A 36 34 1.08      

Unscaled Zero Point Vibrational Energy (zpe) 25519.4 cm-1
Scaled (by 0.9471) Zero Point Vibrational Energy (zpe) 24169.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2=FULL/6-311G*
ABC
0.11857 0.07866 0.05236

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2=FULL/6-311G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.768 -0.550 0.001
O2 2.048 -0.353 -0.365
O3 0.382 -1.558 0.552
C4 -0.082 0.675 -0.310
C5 -1.502 0.452 0.193
O6 -2.104 -0.679 -0.389
N7 0.454 1.916 0.230
H8 2.538 -1.152 -0.133
H9 -0.125 0.766 -1.400
H10 -1.483 0.385 1.291
H11 -2.093 1.325 -0.083
H12 -1.656 -1.447 -0.025
H13 1.351 2.129 -0.183
H14 0.581 1.838 1.232

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34541.21231.52232.48812.90112.49641.87502.11922.75773.42152.58502.74782.6931
O21.34542.25082.36533.68204.16432.83670.96602.65403.96924.47693.87682.58483.0832
O31.21232.25082.43782.77792.79983.48992.29853.07722.79283.85242.12153.88283.4694
C41.52232.36532.43781.52262.43451.45603.19921.09542.14712.12612.65712.04602.0419
C52.48813.68202.77791.52261.40682.44324.35902.12921.09981.09011.91723.33102.7088
O62.90114.16432.79982.43451.40683.69574.67352.65082.08222.02640.96034.45724.0210
N72.49642.83673.48991.45602.44323.69573.72742.07792.68752.63363.97831.01111.0126
H81.87500.96602.29853.19924.35904.67353.72743.51854.53475.25274.20643.48993.8260
H92.11922.65403.07721.09542.12922.65082.07793.51853.03862.43363.02172.34962.9287
H102.75773.96922.79282.14711.09982.08222.68754.53473.03861.77292.26173.64042.5253
H113.42154.47693.85242.12611.09012.02642.63365.25272.43361.77292.80613.53903.0239
H122.58503.87682.12152.65711.91720.96033.97834.20643.02172.26172.80614.67534.1684
H132.74782.58483.88282.04603.33104.45721.01113.48992.34963.64043.53904.67531.6374
H142.69313.08323.46942.04192.70884.02101.01263.82602.92872.52533.02394.16841.6374

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.290 C1 C4 C5 109.598
C1 C4 N7 113.881 C1 C4 H9 106.975
O2 C1 O3 123.210 O2 C1 C4 110.987
O3 C1 C4 125.741 C4 C5 O6 112.354
C4 C5 H10 108.850 C4 C5 H11 107.775
C4 N7 H13 110.764 C4 N7 H14 110.323
C5 C4 N7 110.201 C5 C4 H9 107.718
C5 O6 H12 106.656 O6 C5 H10 111.758
O6 C5 H11 107.824 N7 C4 H9 108.233
H10 C5 H11 108.112 H13 N7 H14 108.020
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability