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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: M06-2X/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at M06-2X/6-311G*
 hartrees
Energy at 0K-398.899824
Energy at 298.15K-398.910056
HF Energy-398.899824
Nuclear repulsion energy326.955866
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at M06-2X/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A 3845 3845 55.45      
2 A 3807 3807 69.13      
3 A 3618 3618 5.11      
4 A 3532 3532 1.13      
5 A 3172 3172 17.16      
6 A 3098 3098 11.35      
7 A 3038 3038 46.95      
8 A 1860 1860 294.86      
9 A 1721 1721 45.93      
10 A 1527 1527 3.39      
11 A 1461 1461 44.39      
12 A 1424 1424 12.45      
13 A 1416 1416 62.05      
14 A 1398 1398 17.57      
15 A 1342 1342 9.23      
16 A 1268 1268 25.42      
17 A 1221 1221 118.06      
18 A 1201 1201 134.82      
19 A 1165 1165 14.53      
20 A 1139 1139 117.17      
21 A 1054 1054 33.78      
22 A 1019 1019 1.20      
23 A 912 912 198.74      
24 A 836 836 30.04      
25 A 763 763 36.77      
26 A 656 656 114.36      
27 A 592 592 8.34      
28 A 577 577 243.31      
29 A 530 530 20.36      
30 A 449 449 7.24      
31 A 318 318 17.71      
32 A 305 305 15.09      
33 A 274 274 22.20      
34 A 233 233 1.90      
35 A 182 182 2.98      
36 A 47 47 0.78      

Unscaled Zero Point Vibrational Energy (zpe) 25498.9 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 25498.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at M06-2X/6-311G*
ABC
0.12019 0.07913 0.05183

See section I.F.4 to change rotational constant units
Geometric Data calculated at M06-2X/6-311G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.760 -0.551 -0.007
O2 2.046 -0.370 -0.336
O3 0.360 -1.555 0.524
C4 -0.081 0.680 -0.320
C5 -1.501 0.466 0.190
O6 -2.093 -0.678 -0.369
N7 0.469 1.914 0.222
H8 2.534 -1.170 -0.100
H9 -0.120 0.767 -1.410
H10 -1.484 0.415 1.288
H11 -2.095 1.332 -0.099
H12 -1.649 -1.447 0.003
H13 1.374 2.116 -0.186
H14 0.592 1.844 1.226

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34051.20361.52312.48692.87862.49261.88172.11632.76513.42152.57002.74342.6992
O21.34052.23352.37203.68244.15132.83050.96672.67133.96464.48383.86432.57993.0750
O31.20362.23352.42872.76702.75383.48312.29483.05942.80433.84062.07833.87423.4780
C41.52312.37202.42871.52422.42841.45523.21081.09472.14992.12872.66222.04862.0483
C52.48693.68242.76701.52421.40372.44584.36412.13511.09921.08981.92713.33652.7120
O62.87864.15132.75382.42841.40373.69244.66152.65852.07622.02850.96254.45684.0143
N72.49262.83053.48311.45522.44583.69243.72522.07962.68282.64913.97861.01251.0141
H81.88170.96672.29483.21084.36414.66153.72523.53714.53745.26254.19403.48653.8230
H92.11632.67133.05941.09472.13512.65852.07963.53713.04342.43723.03922.35572.9350
H102.76513.96462.80432.14991.09922.07622.68284.53743.04341.77142.26833.63762.5208
H113.42154.48383.84062.12871.08982.02852.64915.26252.43721.77142.81663.55733.0394
H122.57003.86432.07832.66221.92710.96253.97864.19403.03922.26832.81664.67664.1650
H132.74342.57993.87422.04863.33654.45681.01253.48652.35573.63763.55734.67661.6369
H142.69923.07503.47802.04832.71204.01431.01413.82302.93502.52083.03944.16501.6369

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 108.201 C1 C4 C5 109.394
C1 C4 N7 113.606 C1 C4 H9 106.743
O2 C1 O3 122.701 O2 C1 C4 111.699
O3 C1 C4 125.522 C4 C5 O6 112.009
C4 C5 H10 108.998 C4 C5 H11 107.898
C4 N7 H13 110.958 C4 N7 H14 110.833
C5 C4 N7 110.327 C5 C4 H9 108.113
C5 O6 H12 107.601 O6 C5 H10 111.522
O6 C5 H11 108.223 N7 C4 H9 108.455
H10 C5 H11 108.045 H13 N7 H14 107.747
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at M06-2X/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.498      
2 O -0.542      
3 O -0.384      
4 C -0.266      
5 C -0.211      
6 O -0.580      
7 N -0.745      
8 H 0.418      
9 H 0.276      
10 H 0.200      
11 H 0.250      
12 H 0.414      
13 H 0.346      
14 H 0.326      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.349 0.176 0.834 3.456
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.657 -2.187 -1.341
y -2.187 -44.328 1.544
z -1.341 1.544 -40.252
Traceless
 xyz
x 0.633 -2.187 -1.341
y -2.187 -3.374 1.544
z -1.341 1.544 2.741
Polar
3z2-r25.481
x2-y22.671
xy-2.187
xz-1.341
yz1.544


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 7.712 0.176 -0.211
y 0.176 7.612 -0.172
z -0.211 -0.172 5.795


<r2> (average value of r2) Å2
<r2> 214.391
(<r2>)1/2 14.642