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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: TPSSh/6-311G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at TPSSh/6-311G*
 hartrees
Energy at 0K-399.055766
Energy at 298.15K-399.065708
HF Energy-399.055766
Nuclear repulsion energy325.209685
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at TPSSh/6-311G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3692 3556 26.56      
2 A 3686 3550 51.17      
3 A 3552 3421 0.29      
4 A 3470 3342 0.92      
5 A 3127 3012 27.29      
6 A 3056 2944 17.21      
7 A 2982 2872 66.80      
8 A 1778 1713 264.41      
9 A 1721 1657 34.49      
10 A 1524 1467 1.80      
11 A 1449 1396 55.42      
12 A 1403 1351 4.98      
13 A 1400 1348 10.41      
14 A 1373 1323 37.25      
15 A 1325 1277 7.78      
16 A 1247 1201 14.57      
17 A 1190 1147 22.51      
18 A 1166 1123 201.66      
19 A 1132 1090 65.22      
20 A 1079 1039 104.74      
21 A 1026 988 32.65      
22 A 993 957 0.62      
23 A 900 866 191.80      
24 A 812 782 21.95      
25 A 737 710 35.41      
26 A 651 627 98.48      
27 A 572 551 38.70      
28 A 563 542 194.47      
29 A 509 490 20.75      
30 A 430 414 8.64      
31 A 294 283 4.97      
32 A 279 268 21.06      
33 A 260 250 24.95      
34 A 211 204 4.99      
35 A 161 155 3.13      
36 A 29 28 0.75      

Unscaled Zero Point Vibrational Energy (zpe) 24888.0 cm-1
Scaled (by 0.9632) Zero Point Vibrational Energy (zpe) 23972.1 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at TPSSh/6-311G*
ABC
0.11858 0.07854 0.05122

See section I.F.4 to change rotational constant units
Geometric Data calculated at TPSSh/6-311G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.773 -0.550 -0.004
O2 2.061 -0.356 -0.355
O3 0.389 -1.561 0.542
C4 -0.085 0.680 -0.313
C5 -1.515 0.452 0.191
O6 -2.110 -0.692 -0.380
N7 0.450 1.929 0.226
H8 2.557 -1.154 -0.115
H9 -0.124 0.772 -1.404
H10 -1.505 0.395 1.290
H11 -2.115 1.316 -0.096
H12 -1.652 -1.459 -0.011
H13 1.352 2.145 -0.184
H14 0.579 1.862 1.232

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.34891.21231.53102.50532.91092.51051.88682.12452.78523.43962.59022.76152.7169
O21.34892.24822.38363.70664.18462.85580.97012.67423.99854.50613.88892.60463.1039
O31.21232.24822.44532.79292.80163.50552.30183.08192.82353.86712.11703.89733.4975
C41.53102.38362.44531.53312.44661.46273.22271.09532.16082.13842.66842.05642.0558
C52.50533.70662.79291.53311.41052.45884.38802.14031.10061.09031.92623.35062.7305
O62.91094.18462.80162.44661.41053.71414.69712.67132.08262.02820.96604.48024.0438
N72.51052.85583.50551.46272.45883.71413.75042.08012.70382.65743.99451.01401.0157
H81.88680.97012.30183.22274.38804.69713.75043.54474.56895.28514.22143.51283.8507
H92.12452.67423.08191.09532.14032.67132.08013.54473.05092.44363.04192.35642.9375
H102.78523.99852.82352.16081.10062.08262.70384.56893.05091.77222.26933.66052.5496
H113.43964.50613.86712.13841.09032.02822.65745.28512.44361.77222.81423.56633.0525
H122.59023.88892.11702.66841.92620.96603.99454.22143.04192.26932.81424.69484.1894
H132.76152.60463.89732.05643.35064.48021.01403.51282.35643.66053.56634.69481.6373
H142.71693.10393.49752.05582.73054.04381.01573.85072.93752.54963.05254.18941.6373

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.790 C1 C4 C5 109.694
C1 C4 N7 113.962 C1 C4 H9 106.812
O2 C1 O3 122.666 O2 C1 C4 111.566
O3 C1 C4 125.688 C4 C5 O6 112.374
C4 C5 H10 109.149 C4 C5 H11 108.011
C4 N7 H13 110.963 C4 N7 H14 110.806
C5 C4 N7 110.300 C5 C4 H9 107.873
C5 O6 H12 106.803 O6 C5 H10 111.468
O6 C5 H11 107.705 N7 C4 H9 107.956
H10 C5 H11 107.971 H13 N7 H14 107.549
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at TPSSh/6-311G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.463      
2 O -0.512      
3 O -0.373      
4 C -0.202      
5 C -0.169      
6 O -0.561      
7 N -0.725      
8 H 0.398      
9 H 0.243      
10 H 0.177      
11 H 0.224      
12 H 0.394      
13 H 0.331      
14 H 0.312      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.284 0.459 0.760 3.402
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.225 0.118 -0.214
y 0.118 8.014 -0.165
z -0.214 -0.165 5.953


<r2> (average value of r2) Å2
<r2> 216.224
(<r2>)1/2 14.705