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All results from a given calculation for C5H4N4 (purine)

using model chemistry: BLYP/3-21G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at BLYP/3-21G*
 hartrees
Energy at 0K-409.529622
Energy at 298.15K-409.537362
HF Energy-409.529622
Nuclear repulsion energy405.167349
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/3-21G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3463 3440 57.61      
2 A' 3203 3182 1.31      
3 A' 3136 3115 20.06      
4 A' 3116 3096 15.93      
5 A' 1532 1522 45.51      
6 A' 1486 1477 26.46      
7 A' 1407 1398 13.11      
8 A' 1398 1388 24.48      
9 A' 1360 1352 9.22      
10 A' 1334 1325 15.96      
11 A' 1292 1284 10.25      
12 A' 1228 1220 24.68      
13 A' 1198 1190 67.34      
14 A' 1154 1147 28.61      
15 A' 1125 1118 14.81      
16 A' 1049 1042 3.30      
17 A' 1011 1005 17.77      
18 A' 904 898 0.77      
19 A' 856 851 10.58      
20 A' 757 752 9.26      
21 A' 643 639 0.63      
22 A' 554 550 2.73      
23 A' 423 420 12.40      
24 A" 984 978 3.05      
25 A" 928 922 14.15      
26 A" 861 855 1.16      
27 A" 835 829 22.48      
28 A" 651 646 17.13      
29 A" 619 615 116.72      
30 A" 614 610 26.31      
31 A" 430 427 2.28      
32 A" 250 248 0.75      
33 A" 235 234 5.05      

Unscaled Zero Point Vibrational Energy (zpe) 20016.4 cm-1
Scaled (by 0.9935) Zero Point Vibrational Energy (zpe) 19886.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/3-21G*
ABC
0.13354 0.05638 0.03964

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/3-21G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.847 -1.282 0.000
C2 -2.155 0.062 0.000
N3 -1.296 1.107 0.000
C4 0.000 0.715 0.000
C5 0.460 -0.638 0.000
C6 -0.543 -1.629 0.000
N7 1.869 -0.699 0.000
C8 2.232 0.588 0.000
N9 1.147 1.497 0.000
H10 -3.217 0.302 0.000
H11 -0.294 -2.692 0.000
H12 3.260 0.927 0.000
H13 1.179 2.516 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.37892.45212.72052.39561.34963.76204.48724.08512.09422.09735.56464.8568
C21.37891.35292.25202.70732.33654.09584.41843.60051.08873.32345.48384.1404
N32.45211.35291.35452.47632.83853.64493.56642.47442.08273.92894.56002.8487
C42.72052.25201.35451.42922.40652.34392.23551.38813.24353.41933.26692.1530
C52.39562.70732.47631.42921.41041.41052.15442.24263.79542.18773.20773.2352
C61.34962.33652.83852.40651.41042.58563.55193.55383.29841.09104.58254.4892
N73.76204.09583.64492.34391.41052.58561.33672.31155.18392.94132.13973.2883
C84.48724.41843.56642.23552.15443.55191.33671.41545.45644.13941.08272.1970
N94.08513.60052.47441.38812.24263.55382.31151.41544.52484.42942.18831.0199
H102.09421.08872.08273.24353.79543.29845.18395.45644.52484.18386.50724.9227
H112.09733.32343.92893.41932.18771.09102.94134.13944.42944.18385.07225.4123
H125.56465.48384.56003.26693.20774.58252.13971.08272.18836.50725.07222.6179
H134.85684.14042.84872.15303.23524.48923.28832.19701.01994.92275.41232.6179

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.696 N1 C2 H10 115.637
N1 C6 C5 120.431 N1 C6 H11 118.100
C2 N1 C6 117.815 C2 N3 C4 112.563
N3 C2 H10 116.667 N3 C4 C5 125.617
N3 C4 N9 128.888 C4 C5 C6 115.878
C4 C5 N7 111.255 C4 N9 C8 105.759
C4 N9 H13 126.095 C5 C4 N9 105.495
C5 C6 H11 121.469 C5 N7 C8 103.261
C6 C5 N7 132.867 N7 C8 N9 114.230
N7 C8 H12 124.009 C8 N9 H13 128.146
N9 C8 H12 121.761
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/3-21G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.471      
2 C 0.167      
3 N -0.527      
4 C 0.581      
5 C 0.145      
6 C 0.080      
7 N -0.507      
8 C 0.264      
9 N -0.688      
10 H 0.209      
11 H 0.209      
12 H 0.217      
13 H 0.322      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.122 3.043 0.000 3.710
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.152 6.070 0.000
y 6.070 -47.208 0.000
z 0.000 0.000 -52.190
Traceless
 xyz
x -0.453 6.070 0.000
y 6.070 3.964 0.000
z 0.000 0.000 -3.510
Polar
3z2-r2-7.021
x2-y2-2.945
xy6.070
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.612 1.459 0.000
y 1.459 10.940 0.000
z 0.000 0.000 3.212


<r2> (average value of r2) Å2
<r2> 262.171
(<r2>)1/2 16.192