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All results from a given calculation for C5H4N4 (purine)

using model chemistry: CISD/3-21G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at CISD/3-21G*
 hartrees
Energy at 0K-407.851123
Energy at 298.15K-407.859383
HF Energy-407.150069
Nuclear repulsion energy410.683897
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at CISD/3-21G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3737 3491 127.40      
2 A' 3381 3159 1.09      
3 A' 3335 3116 17.26      
4 A' 3312 3095 8.47      
5 A' 1690 1579 74.19      
6 A' 1644 1536 48.50      
7 A' 1555 1453 38.51      
8 A' 1532 1431 7.65      
9 A' 1476 1379 25.30      
10 A' 1463 1367 25.36      
11 A' 1413 1320 36.09      
12 A' 1343 1255 40.39      
13 A' 1336 1248 62.07      
14 A' 1237 1156 3.03      
15 A' 1175 1098 53.67      
16 A' 1146 1071 7.68      
17 A' 1101 1029 22.26      
18 A' 982 918 0.06      
19 A' 941 879 15.54      
20 A' 827 773 13.93      
21 A' 697 651 0.57      
22 A' 598 559 2.97      
23 A' 455 425 14.69      
24 A" 1087 1016 0.87      
25 A" 1035 967 12.54      
26 A" 970 906 1.62      
27 A" 910 850 29.80      
28 A" 710 663 75.21      
29 A" 682 637 79.15      
30 A" 660 617 68.43      
31 A" 481 449 2.74      
32 A" 282 263 1.93      
33 A" 253 236 4.84      

Unscaled Zero Point Vibrational Energy (zpe) 21720.9 cm-1
Scaled (by 0.9344) Zero Point Vibrational Energy (zpe) 20296.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at CISD/3-21G*
ABC
0.13808 0.05763 0.04066

See section I.F.4 to change rotational constant units
Geometric Data calculated at CISD/3-21G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.818 -1.268 0.000
C2 -2.132 0.057 0.000
N3 -1.285 1.083 0.000
C4 0.000 0.701 0.000
C5 0.453 -0.623 0.000
C6 -0.532 -1.609 0.000
N7 1.851 -0.678 0.000
C8 2.202 0.585 0.000
N9 1.129 1.477 0.000
H10 -3.179 0.290 0.000
H11 -0.289 -2.657 0.000
H12 3.217 0.922 0.000
H13 1.158 2.481 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36192.41092.68032.36101.33033.71644.42684.02722.06912.06525.49044.7869
C21.36191.33082.22762.67372.31034.05084.36673.55681.07273.28075.41854.0872
N32.41091.33081.34032.43582.79573.59683.52262.44552.05393.87064.50442.8150
C42.68032.22761.34031.40022.37132.30872.20551.36953.20593.37133.22432.1234
C52.36102.67372.43581.40021.39401.39902.12592.20633.74582.16553.16623.1833
C61.33032.31032.79572.37131.39402.55893.50613.50493.25811.07564.52354.4259
N73.71644.05083.59682.30871.39902.55891.31092.27295.12302.91592.10343.2338
C84.42684.36673.52262.20552.12593.50611.31091.39595.38994.08951.06892.1641
N94.02723.55682.44551.36952.20633.50492.27291.39594.46874.37102.16051.0042
H102.06911.07272.05393.20593.74583.25815.12305.38994.46874.12756.42734.8599
H112.06523.28073.87063.37132.16551.07562.91594.08954.37104.12755.01085.3385
H125.49045.41854.50443.22433.16624.52352.10341.06892.16056.42735.01082.5817
H134.78694.08722.81502.12343.18334.42593.23382.16411.00424.85995.33852.5817

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.098 N1 C2 H10 115.889
N1 C6 C5 120.118 N1 C6 H11 117.884
C2 N1 C6 118.213 C2 N3 C4 113.009
N3 C2 H10 117.013 N3 C4 C5 125.435
N3 C4 N9 128.961 C4 C5 C6 116.127
C4 C5 N7 111.127 C4 N9 C8 105.787
C4 N9 H13 126.203 C5 C4 N9 105.604
C5 C6 H11 121.998 C5 N7 C8 103.298
C6 C5 N7 132.747 N7 C8 N9 114.185
N7 C8 H12 123.914 C8 N9 H13 128.010
N9 C8 H12 121.902
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability