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All results from a given calculation for C5H4N4 (purine)

using model chemistry: MP2/3-21G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at MP2/3-21G*
 hartrees
Energy at 0K-408.011397
Energy at 298.15K-408.019251
HF Energy-407.139622
Nuclear repulsion energy405.366344
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/3-21G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3592 3417 114.29      
2 A' 3297 3136 1.06      
3 A' 3246 3088 16.95      
4 A' 3221 3064 9.04      
5 A' 1571 1494 45.27      
6 A' 1527 1453 14.65      
7 A' 1460 1389 15.60      
8 A' 1441 1371 33.58      
9 A' 1398 1330 7.52      
10 A' 1390 1322 26.84      
11 A' 1319 1255 3.12      
12 A' 1258 1197 74.02      
13 A' 1236 1175 41.90      
14 A' 1169 1112 40.47      
15 A' 1158 1102 17.16      
16 A' 1059 1008 9.34      
17 A' 1058 1007 6.92      
18 A' 930 885 0.06      
19 A' 888 845 11.75      
20 A' 772 734 8.72      
21 A' 660 627 0.96      
22 A' 567 539 2.47      
23 A' 430 409 14.33      
24 A" 993 945 0.60      
25 A" 945 899 24.34      
26 A" 867 825 7.79      
27 A" 826 786 11.14      
28 A" 665 632 12.74      
29 A" 631 600 50.18      
30 A" 616 586 127.15      
31 A" 441 420 1.80      
32 A" 258 245 1.58      
33 A" 232 220 4.21      

Unscaled Zero Point Vibrational Energy (zpe) 20558.5 cm-1
Scaled (by 0.9513) Zero Point Vibrational Energy (zpe) 19557.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/3-21G*
ABC
0.13356 0.05645 0.03968

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/3-21G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.837 -1.294 0.000
C2 -2.156 0.052 0.000
N3 -1.302 1.101 0.000
C4 0.000 0.713 0.000
C5 0.463 -0.634 0.000
C6 -0.530 -1.633 0.000
N7 1.873 -0.692 0.000
C8 2.222 0.603 0.000
N9 1.137 1.504 0.000
H10 -3.213 0.283 0.000
H11 -0.280 -2.688 0.000
H12 3.242 0.949 0.000
H13 1.162 2.517 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.38312.45422.72142.39371.35063.75904.48124.08342.09272.09035.55284.8502
C21.38311.35302.25562.70812.34154.09734.41333.59921.08133.32085.47274.1344
N32.45421.35301.35872.47532.84083.64623.55952.47212.07813.92454.54712.8425
C42.72142.25561.35871.42472.40522.34122.22511.38463.24133.41283.25082.1459
C52.39372.70812.47531.42471.40891.41072.15032.24113.78882.18443.19793.2276
C61.35062.34152.84082.40521.40892.58073.54613.55193.29661.08454.57104.4818
N73.75904.09733.64622.34121.41072.58071.34102.31525.17822.93602.13663.2864
C84.48124.41333.55952.22512.15033.54611.34101.41035.44444.13421.07692.1879
N94.08343.59922.47211.38462.24113.55192.31521.41034.51754.42452.17741.0139
H102.09271.08132.07813.24133.78883.29665.17825.44444.51754.17506.48924.9124
H112.09033.32083.92453.41282.18441.08452.93604.13424.42454.17505.06265.4012
H125.55285.47274.54713.25083.19794.57102.13661.07692.17746.48925.06262.6051
H134.85024.13442.84252.14593.22764.48183.28642.18791.01394.91245.40122.6051

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.518 N1 C2 H10 115.698
N1 C6 C5 120.317 N1 C6 H11 117.868
C2 N1 C6 117.858 C2 N3 C4 112.570
N3 C2 H10 116.785 N3 C4 C5 125.562
N3 C4 N9 128.616 C4 C5 C6 116.175
C4 C5 N7 111.325 C4 N9 C8 105.517
C4 N9 H13 126.246 C5 C4 N9 105.822
C5 C6 H11 121.815 C5 N7 C8 102.762
C6 C5 N7 132.500 N7 C8 N9 114.574
N7 C8 H12 123.814 C8 N9 H13 128.237
N9 C8 H12 121.612
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability