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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B3LYP/3-21G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B3LYP/3-21G*
 hartrees
Energy at 0K-409.649280
Energy at 298.15K-409.657312
HF Energy-409.649280
Nuclear repulsion energy409.051417
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B3LYP/3-21G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3588 3451 89.33      
2 A' 3289 3164 0.57      
3 A' 3228 3105 16.94      
4 A' 3209 3087 11.51      
5 A' 1609 1548 54.59      
6 A' 1560 1501 35.60      
7 A' 1465 1409 34.64      
8 A' 1457 1402 3.37      
9 A' 1416 1362 16.21      
10 A' 1386 1333 19.20      
11 A' 1354 1303 23.19      
12 A' 1282 1233 32.22      
13 A' 1266 1218 57.68      
14 A' 1208 1163 36.06      
15 A' 1179 1135 13.39      
16 A' 1101 1060 3.91      
17 A' 1061 1021 19.10      
18 A' 942 906 0.85      
19 A' 895 861 11.65      
20 A' 793 762 11.32      
21 A' 669 643 0.67      
22 A' 575 553 3.18      
23 A' 440 423 13.49      
24 A" 1035 996 2.68      
25 A" 979 942 12.12      
26 A" 910 876 0.29      
27 A" 885 851 27.07      
28 A" 681 655 61.26      
29 A" 664 639 87.11      
30 A" 638 614 33.75      
31 A" 457 439 2.41      
32 A" 266 256 1.31      
33 A" 247 238 5.06      

Unscaled Zero Point Vibrational Energy (zpe) 20867.2 cm-1
Scaled (by 0.962) Zero Point Vibrational Energy (zpe) 20074.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B3LYP/3-21G*
ABC
0.13651 0.05734 0.04038

See section I.F.4 to change rotational constant units
Geometric Data calculated at B3LYP/3-21G*

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.829 -1.271 0.000
C2 -2.137 0.060 0.000
N3 -1.286 1.094 0.000
C4 0.000 0.707 0.000
C5 0.456 -0.631 0.000
C6 -0.537 -1.615 0.000
N7 1.854 -0.689 0.000
C8 2.211 0.584 0.000
N9 1.136 1.483 0.000
H10 -3.191 0.297 0.000
H11 -0.291 -2.669 0.000
H12 3.232 0.922 0.000
H13 1.167 2.495 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36602.42662.69422.37311.33753.72864.44604.04622.07692.07905.51554.8122
C21.36601.33982.23342.68392.31724.06104.38033.56901.08003.29545.43824.1049
N32.42661.33981.34272.45132.81123.61073.53412.45242.06543.89294.52122.8248
C42.69422.23341.34271.41362.38402.32092.21481.37513.21753.38943.23912.1347
C52.37312.68392.45131.41361.39831.39912.13482.22013.76332.17133.18043.2051
C61.33752.31722.81122.38401.39832.56393.52013.52083.27161.08244.54304.4492
N73.72864.06103.61072.32091.39912.56391.32252.28755.14052.91942.11953.2565
C84.44604.38033.53412.21482.13483.52011.32251.40165.41024.10471.07492.1767
N94.04623.56902.45241.37512.22013.52082.28751.40164.48634.39052.17031.0121
H102.07691.08002.06543.21753.76333.27165.14055.41024.48634.14876.45354.8813
H112.07903.29543.89293.38942.17131.08242.91944.10474.39054.14875.03045.3659
H125.51555.43824.52123.23913.18044.54302.11951.07492.17036.45355.03042.5956
H134.81224.10492.82482.13473.20514.44923.25652.17671.01214.88135.36592.5956

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.480 N1 C2 H10 115.729
N1 C6 C5 120.301 N1 C6 H11 118.057
C2 N1 C6 117.979 C2 N3 C4 112.729
N3 C2 H10 116.790 N3 C4 C5 125.561
N3 C4 N9 128.930 C4 C5 C6 115.950
C4 C5 N7 111.207 C4 N9 C8 105.803
C4 N9 H13 126.136 C5 C4 N9 105.508
C5 C6 H11 121.642 C5 N7 C8 103.294
C6 C5 N7 132.843 N7 C8 N9 114.188
N7 C8 H12 123.952 C8 N9 H13 128.061
N9 C8 H12 121.860
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B3LYP/3-21G* Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.520      
2 C 0.194      
3 N -0.572      
4 C 0.634      
5 C 0.130      
6 C 0.106      
7 N -0.547      
8 C 0.291      
9 N -0.760      
10 H 0.230      
11 H 0.233      
12 H 0.239      
13 H 0.343      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.128 3.066 0.000 3.732
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.091 6.182 0.000
y 6.182 -47.236 0.000
z 0.000 0.000 -52.212
Traceless
 xyz
x -0.367 6.182 0.000
y 6.182 3.915 0.000
z 0.000 0.000 -3.549
Polar
3z2-r2-7.097
x2-y2-2.854
xy6.182
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.901 1.391 0.000
y 1.391 10.528 0.000
z 0.000 0.000 3.159


<r2> (average value of r2) Å2
<r2> 258.003
(<r2>)1/2 16.062