return to home page Computational Chemistry Comparison and Benchmark DataBase Release 22 (May 2022) Standard Reference Database 101 National Institute of Standards and Technology
You are here: Calculated > Energy > Optimized > Energy

All results from a given calculation for C5H4N4 (purine)

using model chemistry: M06-2X/6-31G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at M06-2X/6-31G
 hartrees
Energy at 0K-411.638361
Energy at 298.15K-411.646426
HF Energy-411.638361
Nuclear repulsion energy410.413501
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at M06-2X/6-31G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3718 3718 121.71      
2 A' 3331 3331 0.13      
3 A' 3293 3293 8.38      
4 A' 3265 3265 4.46      
5 A' 1690 1690 67.30      
6 A' 1645 1645 52.65      
7 A' 1538 1538 45.72      
8 A' 1504 1504 2.46      
9 A' 1458 1458 35.29      
10 A' 1433 1433 26.49      
11 A' 1384 1384 71.91      
12 A' 1335 1335 23.29      
13 A' 1312 1312 5.09      
14 A' 1274 1274 59.44      
15 A' 1219 1219 3.30      
16 A' 1142 1142 8.46      
17 A' 1110 1110 17.45      
18 A' 965 965 0.16      
19 A' 917 917 11.80      
20 A' 816 816 12.84      
21 A' 672 672 0.34      
22 A' 576 576 3.58      
23 A' 446 446 15.85      
24 A" 1025 1025 0.57      
25 A" 973 973 17.87      
26 A" 922 922 1.82      
27 A" 834 834 21.76      
28 A" 683 683 162.47      
29 A" 674 674 15.03      
30 A" 637 637 33.93      
31 A" 447 447 0.82      
32 A" 264 264 2.86      
33 A" 237 237 3.58      

Unscaled Zero Point Vibrational Energy (zpe) 21368.4 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 21368.4 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at M06-2X/6-31G
ABC
0.13724 0.05776 0.04065

See section I.F.4 to change rotational constant units
Geometric Data calculated at M06-2X/6-31G

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.814 -1.270 0.000
C2 -2.131 0.055 0.000
N3 -1.285 1.087 0.000
C4 0.000 0.704 0.000
C5 0.455 -0.626 0.000
C6 -0.526 -1.620 0.000
N7 1.848 -0.675 0.000
C8 2.199 0.593 0.000
N9 1.126 1.479 0.000
H10 -3.184 0.285 0.000
H11 -0.289 -2.675 0.000
H12 3.219 0.929 0.000
H13 1.156 2.486 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.36242.41562.68122.35901.33463.71014.42424.02542.07282.07375.49274.7882
C21.36241.33452.22802.67472.31984.04554.36333.55531.07793.29355.42134.0883
N32.41561.33451.34102.44202.81123.59433.51882.44322.06143.89164.50692.8135
C42.68122.22801.34101.40592.38292.30552.20151.36713.21183.39153.22682.1237
C52.35902.67472.44201.40591.39681.39352.12742.20953.75192.17993.17143.1897
C61.33462.31982.81122.38291.39682.55543.51033.51213.27041.08144.53064.4370
N73.71014.04553.59432.30551.39352.55541.31522.27135.12292.92702.11023.2353
C84.42424.36333.51882.20152.12743.51031.31521.39125.39194.10701.07432.1612
N94.02543.55532.44321.36712.20953.51212.27131.39124.47294.38852.16361.0072
H102.07281.07792.06143.21183.75193.27045.12295.39194.47294.14096.43564.8662
H112.07373.29353.89163.39152.17991.08142.92704.10704.38854.14095.02965.3592
H125.49275.42134.50693.22683.17144.53062.11021.07432.16366.43565.02962.5843
H134.78824.08832.81352.12373.18974.43703.23532.16121.00724.86625.35922.5843

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.191 N1 C2 H10 115.798
N1 C6 C5 119.439 N1 C6 H11 117.880
C2 N1 C6 118.661 C2 N3 C4 112.764
N3 C2 H10 117.011 N3 C4 C5 125.474
N3 C4 N9 128.888 C4 C5 C6 116.471
C4 C5 N7 110.890 C4 N9 C8 105.903
C4 N9 H13 126.207 C5 C4 N9 105.638
C5 C6 H11 122.681 C5 N7 C8 103.474
C6 C5 N7 132.639 N7 C8 N9 114.096
N7 C8 H12 123.732 C8 N9 H13 127.890
N9 C8 H12 122.172
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at M06-2X/6-31G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.387      
2 C 0.095      
3 N -0.332      
4 C 0.385      
5 C 0.062      
6 C 0.049      
7 N -0.387      
8 C 0.257      
9 N -0.746      
10 H 0.200      
11 H 0.208      
12 H 0.221      
13 H 0.376      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.228 3.102 0.000 3.819
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.273 6.468 0.000
y 6.468 -48.234 0.000
z 0.000 0.000 -52.362
Traceless
 xyz
x -0.975 6.468 0.000
y 6.468 3.584 0.000
z 0.000 0.000 -2.609
Polar
3z2-r2-5.217
x2-y2-3.039
xy6.468
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.096 1.290 0.000
y 1.290 11.071 0.000
z 0.000 0.000 3.794


<r2> (average value of r2) Å2
<r2> 257.024
(<r2>)1/2 16.032