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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: CID/6-31G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at CID/6-31G
 hartrees
Energy at 0K-397.167189
Energy at 298.15K-397.177302
HF Energy-396.533990
Nuclear repulsion energy322.972734
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at CID/6-31G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3838 3590 40.40      
2 A 3809 3562 68.00      
3 A 3793 3547 11.10      
4 A 3671 3434 4.45      
5 A 3250 3040 16.58      
6 A 3171 2966 9.27      
7 A 3123 2920 39.84      
8 A 1817 1699 240.42      
9 A 1795 1678 35.78      
10 A 1612 1507 3.21      
11 A 1491 1394 11.47      
12 A 1476 1380 15.31      
13 A 1458 1364 22.11      
14 A 1448 1354 42.77      
15 A 1399 1308 19.14      
16 A 1309 1224 13.75      
17 A 1235 1155 13.39      
18 A 1206 1128 169.61      
19 A 1190 1113 111.45      
20 A 1110 1038 41.67      
21 A 1065 996 109.97      
22 A 1035 968 0.31      
23 A 847 792 31.18      
24 A 760 711 28.59      
25 A 726 679 333.11      
26 A 639 598 174.38      
27 A 611 571 29.19      
28 A 537 502 233.03      
29 A 521 487 89.72      
30 A 464 434 7.89      
31 A 314 294 11.56      
32 A 291 272 16.50      
33 A 282 264 35.29      
34 A 218 204 1.47      
35 A 170 159 5.34      
36 A 47 44 1.75      

Unscaled Zero Point Vibrational Energy (zpe) 25861.5 cm-1
Scaled (by 0.9352) Zero Point Vibrational Energy (zpe) 24185.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at CID/6-31G
ABC
0.11605 0.07697 0.05131

See section I.F.4 to change rotational constant units
Geometric Data calculated at CID/6-31G

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.780 -0.551 0.013
O2 2.085 -0.378 -0.359
O3 0.383 -1.578 0.555
C4 -0.079 0.672 -0.308
C5 -1.517 0.471 0.193
O6 -2.151 -0.681 -0.386
N7 0.473 1.929 0.221
H8 2.661 -1.137 -0.171
H9 -0.115 0.750 -1.398
H10 -1.516 0.425 1.290
H11 -2.089 1.348 -0.100
H12 -1.797 -1.515 -0.051
H13 1.345 2.210 -0.209
H14 0.560 1.951 1.230

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.36771.22791.52852.52042.96102.50671.97882.11662.80213.44222.75262.82622.7911
O21.36772.27432.40573.74134.24692.87270.97132.68094.04054.52394.05702.69533.2054
O31.22792.27432.45422.81812.84843.52392.43143.07882.85593.88632.26383.98213.5980
C41.52852.40572.45421.53592.47591.47093.28621.09272.16302.13072.79352.09802.1005
C52.52043.74132.81811.53591.43702.46684.49152.13861.09761.08712.02133.37252.7535
O62.96104.24692.84842.47591.43703.75034.83862.68622.10552.04960.96664.53974.1101
N72.50672.87273.52391.47092.46683.75033.78622.08692.71312.64694.13411.01161.0135
H81.97880.97132.43143.28624.49154.83863.78623.57324.69225.36114.47603.59603.9890
H92.11662.68093.07881.09272.13862.68622.08693.57323.04792.43703.12642.38242.9675
H102.80214.04052.85592.16301.09762.10552.71314.69223.04791.76442.37493.69002.5778
H113.44224.52393.88632.13071.08712.04962.64695.36112.43701.76442.87863.54213.0256
H122.75264.05702.26382.79352.02130.96664.13414.47603.12642.37492.87864.87594.3839
H132.82622.69533.98212.09803.37254.53971.01163.59602.38243.69003.54214.87591.6593
H142.79113.20543.59802.10052.75354.11011.01353.98902.96752.57783.02564.38391.6593

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 114.504 C1 C4 C5 110.671
C1 C4 N7 113.376 C1 C4 H9 106.515
O2 C1 O3 122.289 O2 C1 C4 112.212
O3 C1 C4 125.493 C4 C5 O6 112.741
C4 C5 H10 109.312 C4 C5 H11 107.408
C4 N7 H13 114.089 C4 N7 H14 114.186
C5 C4 N7 110.236 C5 C4 H9 107.703
C5 O6 H12 113.018 O6 C5 H10 111.647
O6 C5 H11 107.783 N7 C4 H9 108.083
H10 C5 H11 107.726 H13 N7 H14 110.041
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability