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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: B2PLYP/6-31G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at B2PLYP/6-31G
 hartrees
Energy at 0K-398.303123
Energy at 298.15K-398.313029
HF Energy-398.046443
Nuclear repulsion energy321.632509
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B2PLYP/6-31G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
(Å4/u)
Dep P Dep U
1 A 3683 3683 6.66      
2 A 3630 3630 28.36      
3 A 3611 3611 46.23      
4 A 3560 3560 2.64      
5 A 3188 3188 16.83      
6 A 3098 3098 10.42      
7 A 3038 3038 49.46      
8 A 1735 1735 47.76      
9 A 1688 1688 161.75      
10 A 1563 1563 2.66      
11 A 1440 1440 19.06      
12 A 1416 1416 6.46      
13 A 1413 1413 15.09      
14 A 1385 1385 35.93      
15 A 1345 1345 22.71      
16 A 1263 1263 13.75      
17 A 1195 1195 15.30      
18 A 1161 1161 28.62      
19 A 1127 1127 212.06      
20 A 1050 1050 28.07      
21 A 1020 1020 102.55      
22 A 995 995 30.10      
23 A 810 810 28.11      
24 A 720 720 32.86      
25 A 686 686 297.26      
26 A 637 637 161.93      
27 A 579 579 4.66      
28 A 557 557 277.47      
29 A 512 512 24.45      
30 A 440 440 7.19      
31 A 306 306 9.64      
32 A 283 283 8.83      
33 A 266 266 39.53      
34 A 218 218 5.67      
35 A 164 164 3.71      
36 A 33 33 1.35      

Unscaled Zero Point Vibrational Energy (zpe) 24908.8 cm-1
Scaled (by 1) Zero Point Vibrational Energy (zpe) 24908.8 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B2PLYP/6-31G
ABC
0.11601 0.07708 0.05025

See section I.F.4 to change rotational constant units
Geometric Data calculated at B2PLYP/6-31G

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.772 -0.557 0.010
O2 2.084 -0.388 -0.359
O3 0.358 -1.588 0.555
C4 -0.074 0.680 -0.310
C5 -1.513 0.481 0.192
O6 -2.148 -0.672 -0.389
N7 0.487 1.933 0.224
H8 2.642 -1.167 -0.159
H9 -0.109 0.762 -1.402
H10 -1.504 0.433 1.292
H11 -2.086 1.361 -0.098
H12 -1.764 -1.499 -0.043
H13 1.371 2.199 -0.202
H14 0.578 1.942 1.238

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.37361.23711.53252.51602.94912.51611.97482.12362.79333.44392.70492.82912.7911
O21.37362.29242.40763.74084.24142.87690.97992.68604.03394.52934.01702.68793.2006
O31.23712.29242.46592.81342.83053.53972.42983.09382.84573.88612.20633.99333.6023
C41.53252.40762.46591.53702.47731.47303.28821.09542.16162.13522.77012.09922.1006
C52.51603.74082.81341.53701.43852.47184.48392.14241.10111.08972.00913.38002.7569
O62.94914.24142.83052.47731.43853.75574.82142.69122.11162.05490.97494.54564.1120
N72.51612.87693.53971.47302.47183.75573.79562.08992.71222.65544.11261.01681.0185
H81.97480.97992.42983.28824.48394.82143.79563.58254.67545.36254.41993.59903.9849
H92.12362.68603.09381.09542.14242.69122.08993.58253.05132.44333.11382.38592.9716
H102.79334.03392.84572.16161.10112.11162.71224.67543.05131.76952.36213.69032.5718
H113.44394.52933.88612.13521.08972.05492.65545.36252.44331.76952.87853.55883.0363
H122.70494.01702.20632.77012.00910.97494.11264.41993.11382.36212.87854.85034.3542
H132.82912.68793.99332.09923.38004.54561.01683.59902.38593.69033.55884.85031.6644
H142.79113.20063.60232.10062.75694.11201.01853.98492.97162.57183.03634.35421.6644

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 113.026 C1 C4 C5 110.105
C1 C4 N7 113.668 C1 C4 H9 106.641
O2 C1 O3 122.732 O2 C1 C4 111.767
O3 C1 C4 125.490 C4 C5 O6 112.682
C4 C5 H10 108.918 C4 C5 H11 107.535
C4 N7 H13 113.684 C4 N7 H14 113.685
C5 C4 N7 110.387 C5 C4 H9 107.766
C5 O6 H12 111.248 O6 C5 H10 111.812
O6 C5 H11 107.945 N7 C4 H9 108.020
H10 C5 H11 107.737 H13 N7 H14 109.720
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B2PLYP/6-31G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.531      
2 O -0.580      
3 O -0.443      
4 C -0.070      
5 C 0.001      
6 O -0.641      
7 N -0.700      
8 H 0.398      
9 H 0.204      
10 H 0.127      
11 H 0.180      
12 H 0.388      
13 H 0.312      
14 H 0.293      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.547 0.552 1.002 3.727
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -43.064 -2.458 -1.777
y -2.458 -43.669 1.752
z -1.777 1.752 -40.350
Traceless
 xyz
x -1.055 -2.458 -1.777
y -2.458 -1.962 1.752
z -1.777 1.752 3.017
Polar
3z2-r26.033
x2-y20.604
xy-2.458
xz-1.777
yz1.752


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 7.332 0.364 -0.220
y 0.364 7.408 -0.225
z -0.220 -0.225 5.237


<r2> (average value of r2) Å2
<r2> 220.703
(<r2>)1/2 14.856