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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HF/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HF/6-311G**
 hartrees
Energy at 0K-409.561073
Energy at 298.15K-409.569421
HF Energy-409.561073
Nuclear repulsion energy417.018536
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3899 3542 129.36      
2 A' 3396 3085 2.66      
3 A' 3354 3047 21.08      
4 A' 3343 3037 17.27      
5 A' 1825 1658 119.89      
6 A' 1792 1628 167.74      
7 A' 1707 1551 42.70      
8 A' 1620 1471 10.84      
9 A' 1550 1408 87.57      
10 A' 1549 1408 56.96      
11 A' 1486 1350 72.72      
12 A' 1419 1289 25.19      
13 A' 1397 1270 7.59      
14 A' 1305 1185 6.00      
15 A' 1258 1143 45.65      
16 A' 1222 1110 12.11      
17 A' 1157 1051 29.44      
18 A' 1020 927 1.21      
19 A' 987 897 18.66      
20 A' 869 789 22.12      
21 A' 713 648 0.08      
22 A' 615 558 3.16      
23 A' 480 437 13.31      
24 A" 1131 1028 0.37      
25 A" 1070 973 5.58      
26 A" 1028 934 3.36      
27 A" 901 818 17.22      
28 A" 720 654 18.93      
29 A" 671 610 18.74      
30 A" 552 501 112.50      
31 A" 463 421 17.33      
32 A" 277 252 0.11      
33 A" 254 230 7.48      

Unscaled Zero Point Vibrational Energy (zpe) 22513.3 cm-1
Scaled (by 0.9085) Zero Point Vibrational Energy (zpe) 20453.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/6-311G**
ABC
0.14193 0.05953 0.04194

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/6-311G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.803 -1.241 0.000
C2 -2.095 0.067 0.000
N3 -1.266 1.083 0.000
C4 0.000 0.694 0.000
C5 0.443 -0.617 0.000
C6 -0.540 -1.596 0.000
N7 1.824 -0.672 0.000
C8 2.178 0.562 0.000
N9 1.126 1.452 0.000
H10 -3.144 0.305 0.000
H11 -0.319 -2.650 0.000
H12 3.201 0.885 0.000
H13 1.172 2.443 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34092.38572.64532.33131.31193.67184.37063.97922.04692.04615.43744.7355
C21.34091.31102.18672.62892.27673.98854.30153.50591.07583.24645.35904.0391
N32.38571.31101.32452.41132.77543.55443.48332.42032.03283.85184.47192.7915
C42.64532.18671.32451.38472.35262.27962.18211.35723.16813.36003.20702.1051
C52.33132.62892.41131.38471.38681.38222.09792.17933.70412.17143.14073.1461
C61.31192.27672.77542.35261.38682.53813.47033.47323.22401.07774.48884.3864
N73.67183.98853.55442.27961.38222.53811.28442.23655.06372.91702.07883.1833
C84.37064.30153.48332.18212.09793.47031.28441.37805.32844.06931.07292.1332
N93.97923.50592.42031.35722.17933.47322.23651.37804.42144.34982.15160.9921
H102.04691.07582.03283.16813.70413.22405.06375.32844.42144.08826.37194.8164
H112.04613.24643.85183.36002.17141.07772.91704.06934.34984.08824.98955.3074
H125.43745.35904.47193.20703.14074.48882.07881.07292.15166.37194.98952.5589
H134.73554.03912.79152.10513.14614.38643.18332.13320.99214.81645.30742.5589

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.216 N1 C2 H10 115.332
N1 C6 C5 119.486 N1 C6 H11 117.463
C2 N1 C6 118.234 C2 N3 C4 112.140
N3 C2 H10 116.451 N3 C4 C5 125.743
N3 C4 N9 128.984 C4 C5 C6 116.181
C4 C5 N7 110.951 C4 N9 C8 105.834
C4 N9 H13 126.587 C5 C4 N9 105.273
C5 C6 H11 123.051 C5 N7 C8 103.703
C6 C5 N7 132.869 N7 C8 N9 114.240
N7 C8 H12 123.481 C8 N9 H13 127.579
N9 C8 H12 122.279
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/6-311G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.421      
2 C 0.231      
3 N -0.452      
4 C 0.528      
5 C -0.078      
6 C 0.224      
7 N -0.425      
8 C 0.275      
9 N -0.506      
10 H 0.117      
11 H 0.129      
12 H 0.123      
13 H 0.254      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.247 2.898 0.000 3.667
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.230 6.359 0.000
y 6.359 -47.653 0.000
z 0.000 0.000 -52.276
Traceless
 xyz
x -0.266 6.359 0.000
y 6.359 3.600 0.000
z 0.000 0.000 -3.335
Polar
3z2-r2-6.669
x2-y2-2.577
xy6.359
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.507 1.360 0.000
y 1.360 11.070 0.000
z 0.000 0.000 4.961


<r2> (average value of r2) Å2
<r2> 249.800
(<r2>)1/2 15.805