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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HF/6-31G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HF/6-31G**
 hartrees
Energy at 0K-409.480792
Energy at 298.15K-409.489115
HF Energy-409.480792
Nuclear repulsion energy416.777826
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/6-31G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3920 3539 133.64      
2 A' 3423 3089 3.36      
3 A' 3376 3047 23.28      
4 A' 3367 3039 18.75      
5 A' 1837 1658 120.05      
6 A' 1801 1626 161.06      
7 A' 1723 1555 42.81      
8 A' 1631 1472 12.25      
9 A' 1561 1409 128.26      
10 A' 1558 1407 15.75      
11 A' 1496 1350 70.61      
12 A' 1428 1289 22.61      
13 A' 1407 1270 9.74      
14 A' 1312 1185 5.48      
15 A' 1279 1154 50.11      
16 A' 1231 1111 7.98      
17 A' 1165 1052 26.81      
18 A' 1023 923 1.28      
19 A' 988 892 18.31      
20 A' 872 787 22.70      
21 A' 713 643 0.18      
22 A' 615 555 3.61      
23 A' 481 434 13.54      
24 A" 1131 1021 0.60      
25 A" 1069 965 4.55      
26 A" 1029 929 2.54      
27 A" 890 803 18.57      
28 A" 721 650 20.89      
29 A" 670 605 18.91      
30 A" 556 501 138.13      
31 A" 464 419 14.10      
32 A" 278 251 0.12      
33 A" 253 228 6.23      

Unscaled Zero Point Vibrational Energy (zpe) 22634.1 cm-1
Scaled (by 0.9026) Zero Point Vibrational Energy (zpe) 20429.6 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/6-31G**
ABC
0.14168 0.05949 0.04190

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/6-31G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.803 -1.242 0.000
C2 -2.095 0.066 0.000
N3 -1.267 1.083 0.000
C4 0.000 0.695 0.000
C5 0.444 -0.617 0.000
C6 -0.539 -1.596 0.000
N7 1.825 -0.672 0.000
C8 2.177 0.563 0.000
N9 1.125 1.453 0.000
H10 -3.144 0.303 0.000
H11 -0.318 -2.651 0.000
H12 3.199 0.887 0.000
H13 1.171 2.444 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34112.38642.64622.33201.31253.67224.37043.97972.04682.04675.43674.7367
C21.34111.31142.18752.62982.27763.98934.30143.50641.07553.24715.35804.0405
N32.38641.31141.32502.41232.77663.55553.48322.42072.03283.85274.47062.7925
C42.64622.18751.32501.38542.35362.28042.18131.35693.16853.36073.20532.1055
C52.33202.62982.41231.38541.38711.38212.09722.17963.70462.17143.13963.1470
C61.31252.27762.77662.35361.38712.53803.47003.47383.22451.07754.48814.3877
N73.67223.98933.55552.28041.38212.53801.28502.23755.06422.91642.07903.1846
C84.37044.30143.48322.18132.09723.47001.28501.37765.32794.06891.07232.1332
N93.97973.50642.42071.35692.17963.47382.23751.37764.42174.35012.14970.9925
H102.04681.07552.03283.16853.70463.22455.06425.32794.42174.08876.37064.8175
H112.04673.24713.85273.36072.17141.07752.91644.06894.35014.08874.98905.3084
H125.43675.35804.47063.20533.13964.48812.07901.07232.14976.37064.98902.5569
H134.73674.04052.79252.10553.14704.38773.18462.13320.99254.81755.30842.5569

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.225 N1 C2 H10 115.333
N1 C6 C5 119.470 N1 C6 H11 117.486
C2 N1 C6 118.247 C2 N3 C4 112.135
N3 C2 H10 116.442 N3 C4 C5 125.733
N3 C4 N9 128.998 C4 C5 C6 116.189
C4 C5 N7 110.974 C4 N9 C8 105.815
C4 N9 H13 126.614 C5 C4 N9 105.269
C5 C6 H11 123.044 C5 N7 C8 103.632
C6 C5 N7 132.837 N7 C8 N9 114.311
N7 C8 H12 123.501 C8 N9 H13 127.571
N9 C8 H12 122.188
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/6-31G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.566      
2 C 0.322      
3 N -0.599      
4 C 0.640      
5 C 0.092      
6 C 0.180      
7 N -0.555      
8 C 0.364      
9 N -0.743      
10 H 0.163      
11 H 0.184      
12 H 0.184      
13 H 0.334      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.245 2.893 0.000 3.662
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.048 6.375 0.000
y 6.375 -47.395 0.000
z 0.000 0.000 -52.008
Traceless
 xyz
x -0.346 6.375 0.000
y 6.375 3.632 0.000
z 0.000 0.000 -3.287
Polar
3z2-r2-6.573
x2-y2-2.652
xy6.375
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.207 1.323 0.000
y 1.323 10.800 0.000
z 0.000 0.000 4.150


<r2> (average value of r2) Å2
<r2> 249.878
(<r2>)1/2 15.808