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All results from a given calculation for C5H4N4 (purine)

using model chemistry: HF/TZVP

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at HF/TZVP
 hartrees
Energy at 0K-409.589600
Energy at 298.15K-409.597881
HF Energy-409.589600
Nuclear repulsion energy417.457390
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/TZVP
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3896 3540 132.91      
2 A' 3400 3089 1.60      
3 A' 3360 3053 16.54      
4 A' 3349 3043 13.84      
5 A' 1814 1648 124.06      
6 A' 1781 1618 166.78      
7 A' 1702 1547 44.89      
8 A' 1617 1469 10.84      
9 A' 1547 1406 106.58      
10 A' 1547 1405 28.79      
11 A' 1486 1350 71.36      
12 A' 1419 1290 39.43      
13 A' 1399 1271 7.15      
14 A' 1306 1186 4.70      
15 A' 1245 1131 39.82      
16 A' 1219 1107 15.17      
17 A' 1156 1050 32.47      
18 A' 1020 927 0.76      
19 A' 986 896 17.66      
20 A' 868 789 20.03      
21 A' 713 648 0.02      
22 A' 615 559 2.67      
23 A' 482 438 13.84      
24 A" 1111 1010 0.30      
25 A" 1050 954 7.69      
26 A" 1017 925 5.13      
27 A" 871 791 14.29      
28 A" 714 649 14.29      
29 A" 663 603 18.97      
30 A" 528 480 111.59      
31 A" 454 412 15.88      
32 A" 271 246 0.05      
33 A" 243 221 6.91      

Unscaled Zero Point Vibrational Energy (zpe) 22423.5 cm-1
Scaled (by 0.9086) Zero Point Vibrational Energy (zpe) 20374.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/TZVP
ABC
0.14233 0.05963 0.04202

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/TZVP

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.801 -1.241 0.000
C2 -2.095 0.067 0.000
N3 -1.267 1.081 0.000
C4 0.000 0.694 0.000
C5 0.442 -0.617 0.000
C6 -0.538 -1.595 0.000
N7 1.823 -0.671 0.000
C8 2.178 0.563 0.000
N9 1.125 1.452 0.000
H10 -3.144 0.303 0.000
H11 -0.318 -2.649 0.000
H12 3.200 0.885 0.000
H13 1.172 2.443 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34052.38262.64292.32791.31083.66844.36833.97662.04672.04425.43424.7332
C21.34051.30972.18702.62792.27693.98734.30173.50601.07483.24525.35854.0395
N32.38261.30971.32442.40892.77303.55193.48302.42062.03183.84844.47132.7927
C42.64292.18701.32441.38332.35102.27732.18161.35703.16783.35763.20622.1051
C52.32792.62792.40891.38331.38481.38222.09892.17883.70212.16953.14083.1453
C61.31082.27692.77302.35101.38482.53613.46913.47143.22341.07684.48664.3846
N73.66843.98733.55192.27731.38222.53611.28392.23445.06162.91542.07783.1807
C84.36834.30173.48302.18162.09893.46911.28391.37735.32774.06791.07222.1316
N93.97663.50602.42061.35702.17883.47142.23441.37734.42104.34752.15100.9917
H102.04671.07482.03183.16783.70213.22345.06165.32774.42104.08636.37074.8165
H112.04423.24523.84843.35762.16951.07682.91544.06794.34754.08634.98715.3049
H125.43425.35854.47133.20623.14084.48662.07781.07222.15106.37074.98712.5576
H134.73324.03952.79272.10513.14534.38463.18072.13160.99174.81655.30492.5576

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.051 N1 C2 H10 115.417
N1 C6 C5 119.426 N1 C6 H11 117.454
C2 N1 C6 118.356 C2 N3 C4 112.250
N3 C2 H10 116.531 N3 C4 C5 125.642
N3 C4 N9 129.033 C4 C5 C6 116.274
C4 C5 N7 110.870 C4 N9 C8 105.852
C4 N9 H13 126.638 C5 C4 N9 105.324
C5 C6 H11 123.120 C5 N7 C8 103.797
C6 C5 N7 132.856 N7 C8 N9 114.157
N7 C8 H12 123.495 C8 N9 H13 127.510
N9 C8 H12 122.348
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/TZVP Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.113      
2 C -0.002      
3 N -0.130      
4 C -0.103      
5 C 0.144      
6 C -0.209      
7 N -0.089      
8 C 0.018      
9 N -0.117      
10 H 0.105      
11 H 0.112      
12 H 0.125      
13 H 0.260      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.257 2.912 0.000 3.684
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -50.912 6.439 0.000
y 6.439 -48.211 0.000
z 0.000 0.000 -52.553
Traceless
 xyz
x -0.530 6.439 0.000
y 6.439 3.521 0.000
z 0.000 0.000 -2.991
Polar
3z2-r2-5.983
x2-y2-2.701
xy6.439
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 13.970 1.308 0.000
y 1.308 11.598 0.000
z 0.000 0.000 5.949


<r2> (average value of r2) Å2
<r2> 249.695
(<r2>)1/2 15.802