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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: HF/6-31G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at HF/6-31G
 hartrees
Energy at 0K-396.536374
Energy at 298.15K-396.546612
HF Energy-396.536374
Nuclear repulsion energy325.827927
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at HF/6-31G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 4017 3627 62.26      
2 A 3987 3600 107.16      
3 A 3935 3553 21.45      
4 A 3806 3437 8.85      
5 A 3333 3009 20.84      
6 A 3258 2941 11.19      
7 A 3209 2898 42.41      
8 A 1894 1710 304.61      
9 A 1842 1663 41.68      
10 A 1669 1507 3.90      
11 A 1552 1401 10.17      
12 A 1539 1390 28.82      
13 A 1507 1361 9.49      
14 A 1495 1350 48.18      
15 A 1448 1308 37.86      
16 A 1356 1224 21.35      
17 A 1272 1149 20.20      
18 A 1254 1133 267.02      
19 A 1229 1109 23.18      
20 A 1158 1045 77.43      
21 A 1111 1003 94.05      
22 A 1068 964 1.42      
23 A 886 800 36.76      
24 A 799 721 34.45      
25 A 674 608 234.35      
26 A 637 575 35.36      
27 A 616 556 396.79      
28 A 551 497 106.18      
29 A 524 473 186.31      
30 A 483 436 18.13      
31 A 324 292 14.15      
32 A 299 270 2.33      
33 A 295 267 39.93      
34 A 221 200 0.73      
35 A 171 154 6.54      
36 A 52 47 2.52      

Unscaled Zero Point Vibrational Energy (zpe) 26732.2 cm-1
Scaled (by 0.9029) Zero Point Vibrational Energy (zpe) 24136.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at HF/6-31G
ABC
0.11745 0.07795 0.05256

See section I.F.4 to change rotational constant units
Geometric Data calculated at HF/6-31G

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.780 -0.539 0.013
O2 2.072 -0.369 -0.347
O3 0.398 -1.563 0.541
C4 -0.085 0.665 -0.310
C5 -1.514 0.463 0.191
O6 -2.133 -0.687 -0.375
N7 0.460 1.913 0.216
H8 2.663 -1.103 -0.171
H9 -0.115 0.738 -1.390
H10 -1.519 0.418 1.276
H11 -2.086 1.326 -0.106
H12 -1.800 -1.520 -0.049
H13 1.314 2.212 -0.212
H14 0.534 1.960 1.215

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.35181.21361.51762.50992.94282.48071.97352.09812.79293.42152.76142.81162.7839
O21.35182.24002.39263.72054.21732.84970.95852.66454.01924.49674.05082.69363.1982
O31.21362.24002.43292.80712.83013.49092.41813.04702.85253.86372.27603.95683.5891
C41.51762.39262.43291.52742.45471.45983.27041.08272.15302.11702.78982.08842.0945
C52.50993.72052.80711.52741.42372.44934.47522.12831.08641.07662.01803.34942.7358
O62.94284.21732.83012.45471.42373.71934.81772.67032.07942.03140.95424.50714.0805
N72.48072.84973.49091.45982.44933.71933.75452.07132.69792.63274.11851.00101.0027
H81.97350.95852.41813.27044.47524.81773.75453.54874.67945.33404.48363.57963.9793
H92.09812.66453.04701.08272.12832.67032.07133.54873.03032.42433.11982.36732.9497
H102.79294.01922.85252.15301.08642.07942.69794.67943.03031.74802.36433.66952.5693
H113.42154.49673.86372.11701.07662.03142.63275.33402.42431.74802.86053.51523.0020
H122.76144.05082.27602.78982.01800.95424.11854.48363.11982.36432.86054.86354.3770
H132.81162.69363.95682.08843.34944.50711.00103.57962.36733.66953.51524.86351.6456
H142.78393.19823.58912.09452.73584.08051.00273.97932.94972.56933.00204.37701.6456

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 116.303 C1 C4 C5 111.028
C1 C4 N7 112.841 C1 C4 H9 106.381
O2 C1 O3 121.561 O2 C1 C4 112.858
O3 C1 C4 125.581 C4 C5 O6 112.522
C4 C5 H10 109.758 C4 C5 H11 107.506
C4 N7 H13 114.855 C4 N7 H14 115.281
C5 C4 N7 110.132 C5 C4 H9 108.044
C5 O6 H12 114.692 O6 C5 H10 111.168
O6 C5 H11 107.869 N7 C4 H9 108.195
H10 C5 H11 107.821 H13 N7 H14 110.423
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at HF/6-31G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.778      
2 O -0.734      
3 O -0.582      
4 C -0.072      
5 C 0.063      
6 O -0.767      
7 N -0.849      
8 H 0.443      
9 H 0.237      
10 H 0.154      
11 H 0.206      
12 H 0.432      
13 H 0.356      
14 H 0.337      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.099 1.118 0.983 3.438
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -42.284 -2.260 -2.549
y -2.260 -42.921 2.469
z -2.549 2.469 -41.392
Traceless
 xyz
x -0.128 -2.260 -2.549
y -2.260 -1.083 2.469
z -2.549 2.469 1.210
Polar
3z2-r22.421
x2-y20.637
xy-2.260
xz-2.549
yz2.469


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 6.139 0.326 -0.320
y 0.326 6.636 -0.350
z -0.320 -0.350 5.103


<r2> (average value of r2) Å2
<r2> 215.884
(<r2>)1/2 14.693