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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: CCSD/6-31G*

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at CCSD/6-31G*
 hartrees
Energy at 0K-397.835692
Energy at 298.15K-397.845833
HF Energy-396.711047
Nuclear repulsion energy325.110874
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at CCSD/6-31G*
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3763 3554 51.15      
2 A 3709 3502 70.82      
3 A 3584 3384 2.26      
4 A 3488 3294 0.66      
5 A 3157 2981 20.24      
6 A 3094 2922 10.78      
7 A 3035 2866 45.13      
8 A 1859 1755 231.22      
9 A 1728 1632 37.31      
10 A 1559 1472 2.06      
11 A 1478 1396 43.89      
12 A 1453 1372 30.38      
13 A 1439 1359 44.81      
14 A 1418 1339 6.03      
15 A 1364 1288 9.60      
16 A 1278 1207 17.77      
17 A 1230 1162 54.50      
18 A 1208 1141 180.43      
19 A 1176 1111 22.78      
20 A 1128 1065 86.97      
21 A 1066 1007 46.47      
22 A 1027 970 2.22      
23 A 942 889 196.21      
24 A 834 788 16.30      
25 A 756 714 32.82      
26 A 646 610 111.97      
27 A 593 560 9.36      
28 A 556 525 238.92      
29 A 525 496 12.37      
30 A 452 427 6.91      
31 A 311 294 11.88      
32 A 301 284 24.00      
33 A 276 260 22.82      
34 A 225 212 1.85      
35 A 176 166 3.15      
36 A 38 36 1.04      

Unscaled Zero Point Vibrational Energy (zpe) 25435.7 cm-1
Scaled (by 0.9443) Zero Point Vibrational Energy (zpe) 24018.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at CCSD/6-31G*
ABC
0.11873 0.07803 0.05150

See section I.F.4 to change rotational constant units
Geometric Data calculated at CCSD/6-31G*

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.780 -0.544 0.005
O2 2.062 -0.339 -0.366
O3 0.404 -1.564 0.549
C4 -0.090 0.673 -0.310
C5 -1.515 0.446 0.195
O6 -2.115 -0.692 -0.389
N7 0.439 1.923 0.228
H8 2.562 -1.143 -0.131
H9 -0.129 0.760 -1.404
H10 -1.504 0.388 1.296
H11 -2.112 1.319 -0.088
H12 -1.662 -1.466 -0.017
H13 1.345 2.138 -0.182
H14 0.569 1.854 1.237

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.35031.21631.52822.50682.92532.50061.88462.12412.78423.44102.60992.74762.7038
O21.35032.25612.37833.70514.19202.84650.97522.66174.00074.49953.90612.58523.0993
O31.21632.25612.44662.80172.82563.50262.30183.08282.82993.87892.14383.89003.4904
C41.52822.37832.44661.52912.44361.46053.21831.09872.15862.13432.67002.05542.0541
C52.50683.70512.80171.52911.41272.45034.38772.13971.10321.09421.92903.34522.7220
O62.92534.19202.82562.44361.41273.70764.70542.66212.09312.03350.97044.47554.0405
N72.50062.84653.50261.46052.45033.70763.74612.08312.69682.64073.99491.01761.0193
H81.88460.97522.30183.21834.38774.70543.74613.53274.57255.28224.23723.49953.8498
H92.12412.66173.08281.09872.13972.66212.08313.53273.05322.44493.03792.35922.9420
H102.78424.00072.82992.15861.10322.09312.69684.57253.05321.77532.27763.65602.5387
H113.44104.49953.87892.13431.09422.03352.64075.28222.44491.77532.82153.55433.0371
H122.60993.90612.14382.67001.92900.97043.99494.23723.03792.27762.82154.69674.1910
H132.74762.58523.89002.05543.34524.47551.01763.49952.35923.65603.55434.69671.6424
H142.70383.09933.49042.05412.72204.04051.01933.84982.94202.53873.03714.19101.6424

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 107.167 C1 C4 C5 110.162
C1 C4 N7 113.561 C1 C4 H9 106.779
O2 C1 O3 122.967 O2 C1 C4 111.278
O3 C1 C4 125.729 C4 C5 O6 112.267
C4 C5 H10 109.107 C4 C5 H11 107.746
C4 N7 H13 110.808 C4 N7 H14 110.597
C5 C4 N7 110.073 C5 C4 H9 107.909
C5 O6 H12 106.604 O6 C5 H10 112.006
O6 C5 H11 107.737 N7 C4 H9 108.136
H10 C5 H11 107.781 H13 N7 H14 107.477
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability