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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: BLYP/STO-3G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at BLYP/STO-3G
 hartrees
Energy at 0K-393.469997
Energy at 298.15K-393.479426
HF Energy-393.469997
Nuclear repulsion energy314.295288
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/STO-3G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3472 3213 17.26      
2 A 3467 3208 19.14      
3 A 3283 3038 21.15      
4 A 3257 3014 11.44      
5 A 3231 2989 2.42      
6 A 3203 2964 243.07      
7 A 3056 2828 54.79      
8 A 1798 1663 7.30      
9 A 1728 1598 0.29      
10 A 1656 1532 151.58      
11 A 1617 1496 1.07      
12 A 1447 1338 1.75      
13 A 1410 1305 4.17      
14 A 1399 1294 17.21      
15 A 1341 1241 10.29      
16 A 1278 1182 3.00      
17 A 1228 1136 2.18      
18 A 1190 1101 21.37      
19 A 1142 1057 102.92      
20 A 1061 982 22.97      
21 A 1029 952 6.89      
22 A 944 874 11.98      
23 A 904 837 52.54      
24 A 850 787 136.03      
25 A 749 693 8.24      
26 A 649 600 39.25      
27 A 614 568 33.93      
28 A 538 498 13.18      
29 A 482 446 40.76      
30 A 398 368 7.60      
31 A 321 297 0.99      
32 A 310 287 1.17      
33 A 234 217 22.69      
34 A 209 193 27.75      
35 A 170 157 0.36      
36 A 62 57 0.14      

Unscaled Zero Point Vibrational Energy (zpe) 24863.1 cm-1
Scaled (by 0.9252) Zero Point Vibrational Energy (zpe) 23003.3 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/STO-3G
ABC
0.10883 0.07722 0.04749

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/STO-3G

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.794 -0.561 0.014
O2 2.108 -0.356 -0.369
O3 0.388 -1.604 0.553
C4 -0.083 0.699 -0.314
C5 -1.547 0.452 0.193
O6 -2.151 -0.704 -0.400
N7 0.450 1.974 0.232
H8 2.607 -1.194 -0.131
H9 -0.107 0.793 -1.415
H10 -1.530 0.391 1.304
H11 -2.156 1.328 -0.086
H12 -1.649 -1.470 0.005
H13 1.374 2.194 -0.182
H14 0.568 1.914 1.260

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.38451.24301.56952.55612.97712.56681.92592.16442.82293.50402.60652.82162.7800
O21.38452.31712.43303.78524.27382.92201.00342.70614.07344.59383.93702.65983.1903
O31.24302.31712.50612.84602.85773.59302.35783.14112.86773.93442.11353.99233.5933
C41.56952.43302.50611.56852.50051.48523.29431.10542.19182.17832.69462.09162.0921
C52.55613.78522.84601.56851.43252.51094.47912.18511.11241.10321.93393.42152.7838
O62.97714.27382.85772.50051.43253.78594.79052.72932.11842.05581.00224.56844.1235
N72.56682.92203.59301.48522.51093.78593.84932.10112.75192.70374.03961.03621.0369
H81.92591.00342.35783.29434.47914.79053.84933.60004.65645.38954.26673.60523.9686
H92.16442.70613.14111.10542.18512.72932.10113.60003.09472.50043.08532.38242.9778
H102.82294.07342.86772.19181.11242.11842.75194.65643.09471.78892.27273.72682.5929
H113.50404.59383.93442.17831.10322.05582.70375.38952.50041.78892.84533.63633.0947
H122.60653.93702.11352.69461.93391.00224.03964.26673.08532.27272.84534.75394.2361
H132.82162.65983.99232.09163.42154.56841.03623.60522.38243.72683.63634.75391.6753
H142.78003.19033.59332.09212.78384.12351.03693.96862.97782.59293.09474.23611.6753

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.413 C1 C4 C5 109.092
C1 C4 N7 114.313 C1 C4 H9 106.744
O2 C1 O3 123.643 O2 C1 C4 110.742
O3 C1 C4 125.612 C4 C5 O6 112.784
C4 C5 H10 108.490 C4 C5 H11 107.971
C4 N7 H13 110.846 C4 N7 H14 110.842
C5 C4 N7 110.592 C5 C4 H9 108.373
C5 O6 H12 103.770 O6 C5 H10 112.084
O6 C5 H11 107.627 N7 C4 H9 107.494
H10 C5 H11 107.682 H13 N7 H14 107.825
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/STO-3G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.169      
2 O -0.182      
3 O -0.191      
4 C -0.019      
5 C -0.056      
6 O -0.256      
7 N -0.336      
8 H 0.203      
9 H 0.089      
10 H 0.046      
11 H 0.076      
12 H 0.160      
13 H 0.152      
14 H 0.145      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.574 -1.060 0.775 3.808
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -39.214 -3.925 0.362
y -3.925 -41.889 0.650
z 0.362 0.650 -35.944
Traceless
 xyz
x -0.297 -3.925 0.362
y -3.925 -4.310 0.650
z 0.362 0.650 4.607
Polar
3z2-r29.214
x2-y22.675
xy-3.925
xz0.362
yz0.650


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 6.129 -0.048 0.121
y -0.048 5.344 -0.026
z 0.121 -0.026 2.933


<r2> (average value of r2) Å2
<r2> 225.193
(<r2>)1/2 15.006