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All results from a given calculation for C5H4N4 (purine)

using model chemistry: BLYP/6-31G

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at BLYP/6-31G
 hartrees
Energy at 0K-411.689693
Energy at 298.15K-411.697369
HF Energy-411.689693
Nuclear repulsion energy405.060618
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at BLYP/6-31G
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3561 3534 52.96      
2 A' 3225 3200 1.07      
3 A' 3165 3141 17.86      
4 A' 3139 3115 14.79      
5 A' 1563 1551 52.14      
6 A' 1524 1512 33.71      
7 A' 1429 1418 33.76      
8 A' 1417 1406 2.81      
9 A' 1375 1365 14.95      
10 A' 1354 1344 16.57      
11 A' 1311 1301 19.07      
12 A' 1253 1244 43.66      
13 A' 1226 1217 29.61      
14 A' 1206 1197 50.62      
15 A' 1147 1138 4.10      
16 A' 1065 1056 4.95      
17 A' 1041 1033 16.96      
18 A' 914 907 0.37      
19 A' 866 859 11.42      
20 A' 766 760 9.74      
21 A' 639 634 0.37      
22 A' 551 546 2.77      
23 A' 425 422 13.16      
24 A" 947 940 0.97      
25 A" 902 895 15.41      
26 A" 834 827 4.38      
27 A" 779 774 12.09      
28 A" 641 636 0.63      
29 A" 619 614 170.15      
30 A" 602 597 0.26      
31 A" 411 408 0.38      
32 A" 241 239 1.80      
33 A" 223 221 2.69      

Unscaled Zero Point Vibrational Energy (zpe) 20178.4 cm-1
Scaled (by 0.9924) Zero Point Vibrational Energy (zpe) 20025.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at BLYP/6-31G
ABC
0.13324 0.05640 0.03963

See section I.F.4 to change rotational constant units
Geometric Data calculated at BLYP/6-31G

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.842 -1.286 0.000
C2 -2.157 0.057 0.000
N3 -1.300 1.106 0.000
C4 0.000 0.716 0.000
C5 0.460 -0.638 0.000
C6 -0.536 -1.639 0.000
N7 1.870 -0.691 0.000
C8 2.229 0.596 0.000
N9 1.144 1.500 0.000
H10 -3.220 0.292 0.000
H11 -0.295 -2.704 0.000
H12 3.258 0.936 0.000
H13 1.176 2.516 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.38012.45342.72082.39221.35273.75924.48544.08472.09532.09865.56334.8545
C21.38011.35482.25552.70842.34664.09604.41933.60321.08873.33095.48624.1419
N32.45341.35481.35742.47822.85013.64423.56582.47592.08603.94124.56142.8491
C42.72082.25551.35741.42982.41562.34032.23231.38743.24813.43323.26562.1500
C52.39222.70842.47821.42981.41311.41032.15662.24483.79642.20063.20983.2336
C61.35272.34662.85012.41561.41312.58603.55613.56133.30661.09214.58584.4941
N73.75924.09603.64422.34031.41032.58601.33702.30885.18422.95622.13913.2813
C84.48544.41933.56582.23232.15663.55611.33701.41215.45794.15541.08362.1892
N94.08473.60322.47591.38742.24483.56132.30881.41214.52894.44452.18791.0158
H102.09531.08872.08603.24813.79643.30665.18425.45794.52894.18746.51054.9270
H112.09863.33093.94123.43322.20061.09212.95624.15544.44454.18745.08705.4236
H125.56335.48624.56143.26563.20984.58582.13911.08362.18796.51055.08702.6136
H134.85454.14192.84912.15003.23364.49413.28132.18921.01584.92705.42362.6136

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 127.550 N1 C2 H10 115.635
N1 C6 C5 119.729 N1 C6 H11 117.882
C2 N1 C6 118.326 C2 N3 C4 112.533
N3 C2 H10 116.814 N3 C4 C5 125.506
N3 C4 N9 128.853 C4 C5 C6 116.355
C4 C5 N7 110.974 C4 N9 C8 105.762
C4 N9 H13 126.224 C5 C4 N9 105.642
C5 C6 H11 122.388 C5 N7 C8 103.404
C6 C5 N7 132.671 N7 C8 N9 114.218
N7 C8 H12 123.844 C8 N9 H13 128.013
N9 C8 H12 121.938
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at BLYP/6-31G Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.317      
2 C 0.080      
3 N -0.294      
4 C 0.349      
5 C 0.136      
6 C 0.020      
7 N -0.357      
8 C 0.237      
9 N -0.614      
10 H 0.142      
11 H 0.142      
12 H 0.158      
13 H 0.317      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.225 3.053 0.000 3.778
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -51.507 6.274 0.000
y 6.274 -48.198 0.000
z 0.000 0.000 -51.743
Traceless
 xyz
x -1.536 6.274 0.000
y 6.274 3.426 0.000
z 0.000 0.000 -1.890
Polar
3z2-r2-3.781
x2-y2-3.308
xy6.274
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 15.371 1.447 0.000
y 1.447 11.774 0.000
z 0.000 0.000 3.867


<r2> (average value of r2) Å2
<r2> 262.678
(<r2>)1/2 16.207