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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: MP2/SDD

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at MP2/SDD
 hartrees
Energy at 0K-397.342826
Energy at 298.15K-397.352480
HF Energy-396.605880
Nuclear repulsion energy316.594582
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at MP2/SDD
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3655 3528 8.34      
2 A 3649 3522 20.63      
3 A 3603 3478 50.28      
4 A 3522 3400 3.99      
5 A 3182 3071 17.93      
6 A 3113 3005 11.45      
7 A 3046 2940 46.63      
8 A 1716 1656 46.41      
9 A 1644 1587 164.47      
10 A 1531 1478 6.50      
11 A 1420 1370 8.28      
12 A 1403 1355 4.46      
13 A 1387 1339 10.05      
14 A 1369 1322 28.33      
15 A 1295 1250 17.65      
16 A 1249 1206 11.92      
17 A 1160 1120 23.85      
18 A 1132 1092 15.99      
19 A 1091 1053 217.63      
20 A 1025 989 79.24      
21 A 993 959 51.79      
22 A 962 929 71.70      
23 A 795 767 48.95      
24 A 715 690 204.63      
25 A 696 672 77.88      
26 A 602 581 155.69      
27 A 574 554 25.24      
28 A 484 467 178.81      
29 A 470 454 108.35      
30 A 434 419 30.99      
31 A 288 278 40.16      
32 A 278 268 23.26      
33 A 262 253 1.34      
34 A 195 188 0.11      
35 A 144 139 6.08      
36 A 44 42 1.73      

Unscaled Zero Point Vibrational Energy (zpe) 24561.5 cm-1
Scaled (by 0.9653) Zero Point Vibrational Energy (zpe) 23709.2 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at MP2/SDD
ABC
0.10876 0.07391 0.05061

See section I.F.4 to change rotational constant units
Geometric Data calculated at MP2/SDD

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.798 -0.560 0.016
O2 2.117 -0.369 -0.380
O3 0.407 -1.606 0.576
C4 -0.080 0.680 -0.309
C5 -1.539 0.469 0.195
O6 -2.193 -0.691 -0.398
N7 0.467 1.961 0.230
H8 2.706 -1.137 -0.193
H9 -0.116 0.762 -1.409
H10 -1.541 0.416 1.303
H11 -2.116 1.354 -0.101
H12 -1.836 -1.540 -0.063
H13 1.357 2.238 -0.193
H14 0.562 1.970 1.251

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.39001.24901.55472.56003.02302.55252.00402.14812.84313.48832.81152.86132.8262
O21.39002.31662.43643.79464.32242.92040.98592.70664.10274.57844.13472.72233.2488
O31.24902.31662.49952.86992.92393.58442.46903.13382.90043.94732.33334.03353.6426
C41.55472.43642.49951.55752.52041.49373.32911.10332.19132.15372.84102.12292.1240
C52.56003.79462.86991.55751.45772.50024.55522.16371.10911.09682.04683.41582.7899
O63.02304.32242.92392.52041.45773.80854.92422.72902.13152.06720.98024.60734.1706
N72.55252.92043.58441.49372.50023.80853.84652.11272.75132.67354.20071.02411.0257
H82.00400.98592.46903.32914.55524.92423.84653.61294.76335.42804.56173.63494.0423
H92.14812.70663.13381.10332.16372.72902.11273.61293.08262.46123.17292.41392.9992
H102.84314.10272.90042.19131.10912.13152.75134.76333.08261.78322.40373.73602.6156
H113.48834.57843.94732.15371.09682.06722.67355.42802.46121.78322.90703.58503.0625
H122.81154.13472.33332.84102.04680.98024.20074.56173.17292.40372.90704.94824.4495
H132.86132.72234.03352.12293.41584.60731.02413.63492.41393.73603.58504.94821.6704
H142.82623.24883.64262.12402.78994.17061.02574.04232.99922.61563.06254.44951.6704

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 113.937 C1 C4 C5 110.689
C1 C4 N7 113.704 C1 C4 H9 106.600
O2 C1 O3 122.676 O2 C1 C4 111.537
O3 C1 C4 125.781 C4 C5 O6 113.382
C4 C5 H10 109.371 C4 C5 H11 107.190
C4 N7 H13 113.645 C4 N7 H14 113.635
C5 C4 N7 110.038 C5 C4 H9 107.594
C5 O6 H12 112.721 O6 C5 H10 111.565
O6 C5 H11 107.199 N7 C4 H9 107.943
H10 C5 H11 107.873 H13 N7 H14 109.166
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability