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All results from a given calculation for HO2CCHNH2CH2OH (Serine)

using model chemistry: SVWN/6-31G(2df,p)

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes C1 1A
Energy calculated at SVWN/6-31G(2df,p)
 hartrees
Energy at 0K-396.966380
Energy at 298.15K-396.976388
HF Energy-396.966380
Nuclear repulsion energy330.034243
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at SVWN/6-31G(2df,p)
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A 3617 3564 53.87      
2 A 3515 3463 7.18      
3 A 3462 3411 238.00      
4 A 3429 3378 2.47      
5 A 3011 2967 19.84      
6 A 2949 2905 10.97      
7 A 2824 2782 76.44      
8 A 1779 1753 194.62      
9 A 1587 1564 43.98      
10 A 1444 1422 55.78      
11 A 1437 1416 13.83      
12 A 1375 1355 125.32      
13 A 1323 1303 7.11      
14 A 1315 1295 7.61      
15 A 1264 1245 7.92      
16 A 1202 1185 4.02      
17 A 1187 1170 2.06      
18 A 1164 1147 22.75      
19 A 1146 1129 242.00      
20 A 1114 1097 34.74      
21 A 1010 996 26.32      
22 A 966 952 1.38      
23 A 841 829 135.44      
24 A 793 782 78.07      
25 A 745 734 50.71      
26 A 670 660 61.55      
27 A 648 639 116.36      
28 A 568 560 2.85      
29 A 541 533 60.91      
30 A 414 408 7.31      
31 A 306 301 2.20      
32 A 288 284 4.48      
33 A 263 259 3.09      
34 A 186 183 40.52      
35 A 163 161 3.42      
36 A 50 49 0.19      

Unscaled Zero Point Vibrational Energy (zpe) 24299.5 cm-1
Scaled (by 0.9852) Zero Point Vibrational Energy (zpe) 23939.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at SVWN/6-31G(2df,p)
ABC
0.12015 0.08444 0.05232

See section I.F.4 to change rotational constant units
Geometric Data calculated at SVWN/6-31G(2df,p)

Point Group is C1

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
C1 0.714 -0.559 -0.005
O2 2.007 -0.429 -0.316
O3 0.247 -1.548 0.508
C4 -0.057 0.695 -0.327
C5 -1.465 0.504 0.179
O6 -2.034 -0.644 -0.363
N7 0.526 1.896 0.219
H8 2.438 -1.269 -0.064
H9 -0.088 0.781 -1.429
H10 -1.433 0.466 1.288
H11 -2.063 1.382 -0.114
H12 -1.526 -1.379 0.021
H13 1.449 2.066 -0.181
H14 0.634 1.813 1.232

Atom - Atom Distances (Å)
  C1 O2 O3 C4 C5 O6 N7 H8 H9 H10 H11 H12 H13 H14
C11.33581.20911.50652.43222.77312.47211.86472.11302.70843.39032.38602.73162.6765
O21.33582.24292.35013.62974.04732.80850.97622.66303.90014.45983.67402.56113.0513
O31.20912.24292.41292.69332.60403.46752.28183.04822.73633.78301.84643.87133.4602
C41.50652.35012.41291.50902.38821.44243.18521.10562.13472.13172.56522.04182.0394
C52.43223.62972.69331.50901.39072.42964.29382.13531.11071.10161.89053.32602.6890
O62.77314.04732.60402.38821.39073.65254.52532.63732.07802.04080.97284.41683.9621
N72.47212.80853.46751.44242.42963.65253.70802.08242.65042.66063.86931.02051.0218
H81.86470.97622.28183.18524.29384.52533.70803.52714.45215.22373.96633.48043.7987
H92.11302.66303.04821.10562.13532.63732.08243.52713.04852.44802.97272.36012.9441
H102.70843.90012.73632.13471.11072.07802.65044.45213.04851.78992.23963.60922.4681
H113.39034.45983.78302.13171.10162.04082.66065.22372.44801.78992.81563.57883.0455
H122.38603.67401.84642.56521.89050.97283.86933.96632.97272.23962.81564.55624.0397
H132.73162.56113.87132.04183.32604.41681.02053.48042.36013.60923.57884.55621.6508
H142.67653.05133.46022.03942.68903.96211.02183.79872.94412.46813.04554.03971.6508

picture of Serine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
C1 O2 H8 106.482 C1 C4 C5 107.528
C1 C4 N7 113.910 C1 C4 H9 106.986
O2 C1 O3 123.530 O2 C1 C4 111.409
O3 C1 C4 125.021 C4 C5 O6 110.825
C4 C5 H10 108.188 C4 C5 H11 108.480
C4 N7 H13 110.828 C4 N7 H14 110.544
C5 C4 N7 110.794 C5 C4 H9 108.526
C5 O6 H12 104.850 O6 C5 H10 111.857
O6 C5 H11 109.385 N7 C4 H9 108.910
H10 C5 H11 108.005 H13 N7 H14 107.856
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at SVWN/6-31G(2df,p) Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 C 0.358      
2 O -0.337      
3 O -0.322      
4 C -0.220      
5 C -0.158      
6 O -0.383      
7 N -0.513      
8 H 0.326      
9 H 0.168      
10 H 0.098      
11 H 0.153      
12 H 0.309      
13 H 0.265      
14 H 0.255      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  3.697 0.302 0.692 3.773
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -41.096 -3.113 0.124
y -3.113 -43.925 0.691
z 0.124 0.691 -38.882
Traceless
 xyz
x 0.308 -3.113 0.124
y -3.113 -3.936 0.691
z 0.124 0.691 3.628
Polar
3z2-r27.256
x2-y22.829
xy-3.113
xz0.124
yz0.691


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 8.714 -0.002 0.154
y -0.002 8.074 0.115
z 0.154 0.115 6.076


<r2> (average value of r2) Å2
<r2> 209.069
(<r2>)1/2 14.459