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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B1B95/6-31G(2df,p)

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B1B95/6-31G(2df,p)
 hartrees
Energy at 0K-411.824432
Energy at 298.15K-411.832373
HF Energy-411.824432
Nuclear repulsion energy414.909515
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B1B95/6-31G(2df,p)
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3707 3551 95.09      
2 A' 3267 3129 0.79      
3 A' 3200 3065 16.16      
4 A' 3190 3055 16.00      
5 A' 1689 1618 67.32      
6 A' 1652 1582 82.44      
7 A' 1560 1494 27.08      
8 A' 1510 1446 2.88      
9 A' 1455 1394 69.56      
10 A' 1432 1371 24.95      
11 A' 1389 1330 59.12      
12 A' 1335 1279 13.21      
13 A' 1328 1272 13.09      
14 A' 1298 1243 32.63      
15 A' 1217 1165 7.03      
16 A' 1155 1106 5.66      
17 A' 1101 1054 11.72      
18 A' 949 909 1.56      
19 A' 914 875 12.63      
20 A' 815 781 15.83      
21 A' 658 630 0.55      
22 A' 567 543 4.58      
23 A' 448 429 12.19      
24 A" 1015 972 0.42      
25 A" 962 922 5.66      
26 A" 901 863 3.77      
27 A" 837 802 9.31      
28 A" 673 644 6.18      
29 A" 631 604 23.49      
30 A" 552 529 91.64      
31 A" 423 405 2.63      
32 A" 248 238 0.30      
33 A" 237 227 4.27      

Unscaled Zero Point Vibrational Energy (zpe) 21156.9 cm-1
Scaled (by 0.9577) Zero Point Vibrational Energy (zpe) 20262.0 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B1B95/6-31G(2df,p)
ABC
0.13957 0.05926 0.04160

See section I.F.4 to change rotational constant units
Geometric Data calculated at B1B95/6-31G(2df,p)

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.805 -1.249 0.000
C2 -2.092 0.066 0.000
N3 -1.265 1.094 0.000
C4 0.000 0.698 0.000
C5 0.449 -0.623 0.000
C6 -0.536 -1.602 0.000
N7 1.825 -0.683 0.000
C8 2.172 0.569 0.000
N9 1.122 1.459 0.000
H10 -3.148 0.304 0.000
H11 -0.311 -2.663 0.000
H12 3.197 0.902 0.000
H13 1.165 2.462 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34562.40472.65512.33961.31783.67404.37313.98802.05282.05745.44514.7529
C21.34561.31982.18542.63292.28123.98784.29353.50301.08233.25875.35454.0431
N32.40471.31981.32542.42662.79343.56473.47672.41462.04193.87664.46582.7880
C42.65512.18541.32541.39582.36192.28882.17581.35593.17223.37563.20342.1136
C52.33962.63292.42661.39581.38861.37712.09542.18893.71452.17673.14293.1670
C61.31782.28122.79342.36191.38862.53323.47103.48173.23361.08444.49514.4054
N73.67403.98783.56472.28881.37712.53321.29982.25525.06972.91232.09683.2135
C84.37314.29353.47672.17582.09543.47101.29981.37665.32624.07601.07762.1437
N93.98803.50302.41461.35592.18893.48172.25521.37664.42314.36452.14841.0031
H102.05281.08232.04193.17223.71453.23365.06975.32624.42314.10506.37264.8221
H112.05743.25873.87663.37562.17671.08442.91234.07604.36454.10505.00175.3330
H125.44515.35454.46583.20343.14294.49512.09681.07762.14846.37265.00172.5613
H134.75294.04312.78802.11363.16704.40543.21352.14371.00314.82215.33302.5613

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.895 N1 C2 H10 115.020
N1 C6 C5 119.623 N1 C6 H11 117.519
C2 N1 C6 117.854 C2 N3 C4 111.412
N3 C2 H10 116.084 N3 C4 C5 126.166
N3 C4 N9 128.445 C4 C5 C6 116.049
C4 C5 N7 111.268 C4 N9 C8 105.547
C4 N9 H13 126.615 C5 C4 N9 105.390
C5 C6 H11 122.858 C5 N7 C8 102.991
C6 C5 N7 132.683 N7 C8 N9 114.804
N7 C8 H12 123.491 C8 N9 H13 127.838
N9 C8 H12 121.704
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B1B95/6-31G(2df,p) Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.296      
2 C 0.074      
3 N -0.384      
4 C 0.463      
5 C 0.199      
6 C -0.051      
7 N -0.355      
8 C 0.044      
9 N -0.426      
10 H 0.134      
11 H 0.143      
12 H 0.159      
13 H 0.295      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.151 2.908 0.000 3.617
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.198 6.053 0.000
y 6.053 -45.965 0.000
z 0.000 0.000 -50.565
Traceless
 xyz
x -0.932 6.053 0.000
y 6.053 3.916 0.000
z 0.000 0.000 -2.984
Polar
3z2-r2-5.968
x2-y2-3.232
xy6.053
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.866 1.339 0.000
y 1.339 11.525 0.000
z 0.000 0.000 4.949


<r2> (average value of r2) Å2
<r2> 250.696
(<r2>)1/2 15.833