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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B1B95/6-311G**

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B1B95/6-311G**
 hartrees
Energy at 0K-411.888598
Energy at 298.15K-411.896553
HF Energy-411.888598
Nuclear repulsion energy414.879830
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B1B95/6-311G**
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3694 3547 97.56      
2 A' 3261 3131 0.68      
3 A' 3201 3073 15.65      
4 A' 3189 3062 15.31      
5 A' 1690 1623 66.12      
6 A' 1653 1587 86.09      
7 A' 1557 1494 29.79      
8 A' 1511 1450 2.56      
9 A' 1454 1396 73.39      
10 A' 1436 1378 28.99      
11 A' 1387 1332 57.40      
12 A' 1329 1276 11.48      
13 A' 1323 1270 14.87      
14 A' 1296 1244 33.45      
15 A' 1217 1169 6.87      
16 A' 1153 1107 7.07      
17 A' 1098 1054 15.16      
18 A' 952 914 1.20      
19 A' 918 881 12.32      
20 A' 817 784 14.46      
21 A' 662 636 0.36      
22 A' 570 547 3.97      
23 A' 449 431 13.01      
24 A" 1005 965 0.29      
25 A" 953 915 10.98      
26 A" 897 861 5.95      
27 A" 824 791 10.63      
28 A" 671 645 5.02      
29 A" 628 603 30.61      
30 A" 563 541 92.60      
31 A" 421 404 2.74      
32 A" 248 238 0.44      
33 A" 233 224 5.01      

Unscaled Zero Point Vibrational Energy (zpe) 21129.6 cm-1
Scaled (by 0.9601) Zero Point Vibrational Energy (zpe) 20286.5 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B1B95/6-311G**
ABC
0.13961 0.05923 0.04159

See section I.F.4 to change rotational constant units
Geometric Data calculated at B1B95/6-311G**

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.806 -1.248 0.000
C2 -2.093 0.067 0.000
N3 -1.265 1.095 0.000
C4 0.000 0.699 0.000
C5 0.449 -0.622 0.000
C6 -0.536 -1.602 0.000
N7 1.824 -0.684 0.000
C8 2.173 0.566 0.000
N9 1.123 1.458 0.000
H10 -3.148 0.305 0.000
H11 -0.311 -2.661 0.000
H12 3.198 0.897 0.000
H13 1.165 2.461 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34592.40392.65492.33991.31793.67324.37273.98722.05252.05745.44394.7519
C21.34591.31972.18622.63402.28233.98864.29513.50381.08113.25905.35584.0430
N32.40391.31971.32512.42572.79273.56433.47792.41502.04163.87504.46712.7876
C42.65492.18621.32511.39512.36182.28912.17701.35563.17203.37423.20432.1128
C52.33992.63402.42571.39511.38921.37632.09392.18683.71442.17603.14073.1655
C61.31792.28232.79272.36181.38922.53223.46983.48053.23361.08344.49284.4046
N73.67323.98863.56432.28911.37632.53221.29852.25435.06922.90962.09463.2140
C84.37274.29513.47792.17702.09393.46981.29851.37765.32694.07271.07702.1464
N93.98723.50382.41501.35562.18683.48052.25431.37764.42334.36172.14991.0040
H102.05251.08112.04163.17203.71443.23365.06925.32694.42334.10476.37324.8213
H112.05743.25903.87503.37422.17601.08342.90964.07274.36174.10474.99705.3308
H125.44395.35584.46713.20433.14074.49282.09461.07702.14996.37324.99702.5656
H134.75194.04302.78762.11283.16554.40463.21402.14641.00404.82135.33082.5656

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 128.787 N1 C2 H10 115.059
N1 C6 C5 119.598 N1 C6 H11 117.582
C2 N1 C6 117.903 C2 N3 C4 111.502
N3 C2 H10 116.154 N3 C4 C5 126.162
N3 C4 N9 128.543 C4 C5 C6 116.047
C4 C5 N7 111.366 C4 N9 C8 105.588
C4 N9 H13 126.473 C5 C4 N9 105.295
C5 C6 H11 122.819 C5 N7 C8 103.000
C6 C5 N7 132.587 N7 C8 N9 114.751
N7 C8 H12 123.439 C8 N9 H13 127.939
N9 C8 H12 121.810
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B1B95/6-311G** Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.328      
2 C 0.121      
3 N -0.331      
4 C 0.414      
5 C -0.121      
6 C 0.161      
7 N -0.337      
8 C 0.199      
9 N -0.432      
10 H 0.130      
11 H 0.138      
12 H 0.134      
13 H 0.250      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.199 2.966 0.000 3.693
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.820 6.128 0.000
y 6.128 -46.829 0.000
z 0.000 0.000 -51.470
Traceless
 xyz
x -0.671 6.128 0.000
y 6.128 3.816 0.000
z 0.000 0.000 -3.145
Polar
3z2-r2-6.290
x2-y2-2.991
xy6.128
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.881 1.363 0.000
y 1.363 11.621 0.000
z 0.000 0.000 5.066


<r2> (average value of r2) Å2
<r2> 251.251
(<r2>)1/2 15.851