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All results from a given calculation for C5H4N4 (purine)

using model chemistry: B1B95/cc-pVDZ

19 10 17 12 22

States and conformations

State Conformation minimum conformation conformer description state description
1 1 yes CS 1A
Energy calculated at B1B95/cc-pVDZ
 hartrees
Energy at 0K-411.830708
Energy at 298.15K-411.838645
HF Energy-411.830708
Nuclear repulsion energy413.809585
The energy at 298.15K was derived from the energy at 0K and an integrated heat capacity that used the calculated vibrational frequencies.
Vibrational Frequencies calculated at B1B95/cc-pVDZ
Mode Number Symmetry Frequency
(cm-1)
Scaled Frequency
(cm-1)
IR Intensities
(km mol-1)
Raman Act
4/u)
Dep P Dep U
1 A' 3682 3539 99.88      
2 A' 3271 3144 0.41      
3 A' 3207 3082 15.59      
4 A' 3197 3073 15.22      
5 A' 1699 1634 60.67      
6 A' 1665 1600 81.32      
7 A' 1564 1503 29.48      
8 A' 1516 1457 3.91      
9 A' 1460 1404 82.10      
10 A' 1433 1378 17.12      
11 A' 1390 1336 56.62      
12 A' 1342 1290 19.44      
13 A' 1325 1273 6.24      
14 A' 1293 1243 22.77      
15 A' 1215 1168 8.78      
16 A' 1154 1109 6.19      
17 A' 1093 1050 12.26      
18 A' 950 913 1.47      
19 A' 916 881 11.77      
20 A' 817 786 14.94      
21 A' 659 633 0.51      
22 A' 569 547 4.29      
23 A' 448 431 12.31      
24 A" 1004 965 0.30      
25 A" 950 913 8.20      
26 A" 891 857 5.52      
27 A" 827 795 8.44      
28 A" 670 644 4.49      
29 A" 628 604 25.76      
30 A" 547 526 84.44      
31 A" 421 404 3.43      
32 A" 248 238 0.36      
33 A" 234 225 4.80      

Unscaled Zero Point Vibrational Energy (zpe) 21141.2 cm-1
Scaled (by 0.9612) Zero Point Vibrational Energy (zpe) 20320.9 cm-1
See section III.C.1 List or set vibrational scaling factors to change the scale factors used here.
See section III.C.2 Calculate a vibrational scaling factor for a given set of molecules to determine the least squares best scaling factor.
Rotational Constants (cm-1) from geometry optimized at B1B95/cc-pVDZ
ABC
0.13873 0.05900 0.04139

See section I.F.4 to change rotational constant units
Geometric Data calculated at B1B95/cc-pVDZ

Point Group is Cs

Cartesians (Å)
Atom x (Å) y (Å) z (Å)
N1 -1.809 -1.252 0.000
C2 -2.093 0.066 0.000
N3 -1.266 1.098 0.000
C4 0.000 0.700 0.000
C5 0.452 -0.623 0.000
C6 -0.536 -1.605 0.000
N7 1.828 -0.686 0.000
C8 2.172 0.569 0.000
N9 1.122 1.462 0.000
H10 -3.155 0.306 0.000
H11 -0.309 -2.671 0.000
H12 3.203 0.905 0.000
H13 1.165 2.470 0.000

Atom - Atom Distances (Å)
  N1 C2 N3 C4 C5 C6 N7 C8 N9 H10 H11 H12 H13
N11.34802.41182.66152.34701.32063.68074.37793.99442.05872.06475.45664.7642
C21.34801.32282.18732.63692.28333.99274.29503.50521.08853.26705.36264.0492
N32.41181.32281.32692.43192.79923.57163.47862.41552.04843.88874.47352.7914
C42.66152.18731.32691.39852.36642.29442.17621.35603.17953.38583.20992.1188
C52.34702.63692.43191.39851.39291.37732.09282.18983.72482.18523.14693.1742
C61.32062.28332.79922.36641.39292.53633.47293.48603.24141.09074.50344.4155
N73.68073.99273.57162.29441.37732.53631.30182.26125.08072.91702.10313.2253
C84.37794.29503.47862.17622.09283.47291.30181.37845.33374.08151.08432.1513
N93.99443.50522.41551.35602.18983.48602.26121.37844.43044.37392.15471.0092
H102.05871.08852.04843.17953.72483.24145.08075.33374.43044.11826.38644.8317
H112.06473.26703.88873.38582.18521.09072.91704.08154.37394.11825.01275.3486
H125.45665.36264.47353.20993.14694.50342.10311.08432.15476.38645.01272.5701
H134.76424.04922.79142.11883.17424.41553.22532.15131.00924.83175.34862.5701

picture of purine state 1 conformation 1
More geometry information
Calculated Bond Angles
atom1 atom2 atom3 angle atom1 atom2 atom3 angle
N1 C2 N3 129.120 N1 C2 H10 114.911
N1 C6 C5 119.724 N1 C6 H11 117.488
C2 N1 C6 117.654 C2 N3 C4 111.271
N3 C2 H10 115.969 N3 C4 C5 126.302
N3 C4 N9 128.398 C4 C5 C6 115.929
C4 C5 N7 111.496 C4 N9 C8 105.473
C4 N9 H13 126.607 C5 C4 N9 105.300
C5 C6 H11 122.788 C5 N7 C8 102.701
C6 C5 N7 132.575 N7 C8 N9 115.030
N7 C8 H12 123.357 C8 N9 H13 127.920
N9 C8 H12 121.613
Electronic energy levels
Charges, Dipole, Quadrupole and Polarizability
Charges from optimized geometry at B1B95/cc-pVDZ Charges (e)
Number Element Mulliken CHELPG AIM ESP
1 N -0.233      
2 C 0.147      
3 N -0.239      
4 C 0.232      
5 C -0.041      
6 C 0.156      
7 N -0.241      
8 C 0.173      
9 N -0.148      
10 H 0.025      
11 H 0.025      
12 H 0.032      
13 H 0.112      


Electric dipole moments
Electric dipole components in Debye
(What's a Debye? See section VII.A.3)
  x y z Total
  2.158 2.955 0.000 3.659
CHELPG        
AIM        
ESP        


Electric Quadrupole moment
Quadrupole components in D Å
Primitive
 xyz
x -49.512 6.059 0.000
y 6.059 -46.319 0.000
z 0.000 0.000 -51.112
Traceless
 xyz
x -0.797 6.059 0.000
y 6.059 3.994 0.000
z 0.000 0.000 -3.197
Polar
3z2-r2-6.394
x2-y2-3.194
xy6.059
xz0.000
yz0.000


Polarizabilities
Components of the polarizability tensor.
Units are Å3 (Angstrom cubed)
Change units.
  x y z
x 14.818 1.399 0.000
y 1.399 11.441 0.000
z 0.000 0.000 4.623


<r2> (average value of r2) Å2
<r2> 252.082
(<r2>)1/2 15.877